<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22964

Description Uncharacterized protein
SequenceMAMVGHVPVAKTQQASPLRLVEFRMPGKMASGREVVEETVARVIEVIEEKIFVAVGKSVKECKSMLFWALQKSGGKRICIIHVHQPAQMIPFMGTKFPASKLKEQEVRAYWEIERQEMLKMLGEYLFLCRKMGVRAEKLYVEMESIEKGILELISQHGIRKLVMGAAADKRYSKNMMDIKSKKAVSVCLQAPASCHIWFICKGHLIQTRKGALDGTDTDVRPSSQQKSPNTEAGQSNIMRSQSILFGQHHHVKLTNPAQDLFRKVRSLNVNGPGGRLTTPTSPDGGPSTPSRSDADGSSDQYDALSRSTSQNSVLSSRSSSGMANVALIPLLGIEGSEIGSELSTVPHQKVDLFQSSPPSVLDGSIEDPLYDQLEQAMAEAENSRFEASEEAVRCAKEERDVVEAIRKAKASESLYTEESKRRTVVEEELAKEKEELEKINKELEKINKEQDEVMGELCIAQDHKSLLEKQIEESDEMVKELEQKIISAVGLLQNYKKERDHLHKGRDYALKEAEELRRNQTEASSTHMPRFFSDFSFSEIEEATHHFDPSRKIGEGGYGNIYKGVLRQTQVAVKMLDSNSMQGPAEFQQEVNVLSKMRHPNLITLVGACPEAWTLIYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSSKPHSIVHGDLKPANILLDENFVTKLSDFGICRLLDHKEGSSNNTTICRTDPKGTFVYMDPEFVSTGELSPKSDVYSFGIILLRLLTARQALGITKEVRYALDKGTLKTLLDPLAGDWPFVQAEMLAHMALRCCEMNRKNRPDLASEVWRVLEPMKASCGTSSFSQLGSEEHFQPPSYFTCPIFQEVMRDPHVAADGFTYEAEALKGWLDSGHDTSPMTNFKLAHCDLIPNRALRSAIQGQL
Length902
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.422
Instability index52.38
Isoelectric point6.11
Molecular weight100954.15
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22964
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.68|      23|      23|     436|     458|       1
---------------------------------------------------------------------------
  436-  458 (36.85/25.11)	E....LEKINKE....LEKINKEQDEVMGEL
  460-  482 (18.08/ 8.42)	........IAQDhkslLEKQIEESDEMVKEL
  488-  513 (24.75/14.34)	SavglLQNYKKE....RDHLHKGRDYALKE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.88|      22|      23|     388|     410|       2
---------------------------------------------------------------------------
  388-  410 (30.62/21.73)	ASEEAVRCAKEERDVVEAiRKAK
  411-  432 (34.26/19.90)	ASESLYTEESKRRTVVEE.ELAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.74|      25|      25|     269|     293|       3
---------------------------------------------------------------------------
  255-  276 (26.11/13.79)	....TNPAQDLFRKVRSlNVNGPGGR
  277-  301 (44.60/28.98)	LTTPTSPDGGPSTPSRS.DADGSSDQ
  305-  319 (17.02/ 6.32)	LSRSTSQNSVLS..SRS.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.84|      29|      29|     110|     138|       4
---------------------------------------------------------------------------
   88-  108 (25.41/13.84)	.......Q..MIPFMGTK.FPASK..LKEQEVR
  110-  138 (52.19/36.44)	YWEIERQE..MLKMLGEYLFLCRK..MGVRAEK
  140-  170 (33.24/20.45)	YVEMESIEkgILELISQHGI..RKlvMGAAADK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.21|      28|      48|     689|     716|       5
---------------------------------------------------------------------------
  689-  716 (52.01/33.95)	FGIC..RLLDHKEGSSNNTTICRTDPKGTF
  738-  767 (41.20/25.49)	FGIIllRLLTARQALGITKEVRYALDKGTL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22964 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GALDGTDTDVRPSSQQKSPNTEAGQSNIMRSQ
2) IGSELSTVPHQKVDLFQSSPPSVLDGSIEDPLYDQLEQAMAEAENSRFEASEEAV
3) RKVRSLNVNGPGGRLTTPTSPDGGPSTPSRSDADGSSDQYDALSRSTSQNSVLSSRSS
211
339
263
242
393
320










Molecular Recognition Features






MoRF SequenceStartStop




NANANA