<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22960
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MSSGKSKTSNGFIGMPYHVSQGPGCQLREQNCYVEITLGCPRSESDKELETNLQSTKNSSKNHIAESPAVRRGDQKVSPDHLSAYEKAFIYPVEAIVVPVLPKSFARSSLKRFWLQNWIGPSLPGSSFFMHCGGDTDFLEGSWIESNGLRMQHSYNSSSNSNSSSISSIISGSSDSDYKMTTGELEADGDSLSCRQSGLSSNDQMEIDDLKLGSKRPRTGMNEPYGQVGTVKNAPMQEFGSVEVNASAITGIANEQIGSRWDWDDDRGAGMDIQALLSEFGDFGDFFENDDLPFGEPPGTAESQALMFSGPDCGEVANTPIGVMDVVDQMLLPAAFPSFESFNPSPAVAIDESASKSQEATHGALALVPVNCTPPSSSGEFDYLIKAEALLTFAPEYGAVETPTSEFSSSIFRRPYCPKSRQVESSNPSSNKYAYGATPPPSPFFEGSNEKTGMQVNLKTGAGRNDTKKYYTLVESGKVHLDRRTFIFNESHPTSEVMVPSPLLTSNSSNTVQRKMSDCILGAENFLFSMKTVLATEVECIMFQASMCSMRHMLLSYGNPTPVNLSRLSGSTVLNQLHGDASTMTDSISARYEVKKKESIPVRIAGDMDGGLLDGHLNAPVGVWRSVGVPKLTKHTSSPNIEVSASLPHHSFSEEGILSYRQRQQPLQELLDGMALLVQQATSFVDVALDADCGDGPYGWLALQEHWRRGFSCGPSMVHAGCGGALAACHSLDIAGVELVDPLSADIHSSAVISLLQSEIKTALKSAFGNLDGPLCVTDWCKGRFQSGDGATTCDGLIGESTLSGCKDSSSIVTLPVGEPMSPALSCAAGSSSLKASSTLDGAKVDETSQRRSNQEIEPELRFRIKPTVFVLPSPAILVGYQDDWLKTSASSLQLWEKAPFEPYASPKPISYYVVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQSLGNHMEMDAGKSLYTGFVLLDCPQSMKIESSNASLVGSISDYFLSLSNGWDLASYLKSLSKAVKALKIGPSLLTNPKEGSSSSCMVIYVVCPFPEPAAVLQTVIESSVAIGSIIPPADRERRSMLLGQVRKALSSLAAVDDASASNVLVLSGFSTPKLVLQIVTVDAIFRVTSPALNELIILKETAFTVYNKARRISKGSSNDVQSSSASSRSHSALTQMSSVPAMWNSLPREADIDSRLRAGTWDNSWQTMRTGSLTCDPNRNGDFSLQDEIHYMFEPLFILSEPGSLEHAVTPAVFGNLGSESLKMQSDDSSGSFMQSASSAGSVDTGSSSQHDGSEPTGFGSSHQKALPSLHCCYGWTEDWRWLVCIWTDARGELLDSHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQSCSSPDTGSVKPRDFVITRIGSFFELEYIEWQRAIYSVGGSEVKKWPLQLRRSMPDGMAASTNGASLQQQEMSLIQERTLPSSPSLLYSPLLKASGYMKGGLGQPSSRKQLMGGYTVVDNSRGMLQWVQSITLVTISVDHSLHLMFQADMPSPGGNGSSVGPSIYREGISPVKSLGSTSASYILIPSPSMRFLPPTPLQHPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSMRNDYRSDAREEWPSVLSVSLIDYYGDNNMTEDKMYRGIMKQGGRTLGTDGKDLEIGTQLILENIAAELQALSWMTVSPAYLERRTALPFHCDMVLRLRRLLHFADKELSSQPGRSQV |
Length | 1717 |
Position | Kinase |
Organism | Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.232 |
Instability index | 55.86 |
Isoelectric point | 5.30 |
Molecular weight | 185586.11 |
Publications | PubMed=16973872
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP22960
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 1745.03| 544| 635| 393| 1022| 1
---------------------------------------------------------------------------
115- 708 (616.84/479.12) ..........................................................LQNWIGPSLPgSSFfmhcGG.DTDFLE.GSWIESnglRMQhSYNSSSNSN...SSSISSIISGSSDSDYKMTTGELEADGDSLSCrQSGLSS.NDQMEIDDLKLGSKRPRT........................GMNE..................PYGQVGTVKNAPMQEFGSV..EVNASA.ITGIANEQIGS.RWdwdddrGAGMDIQALLSEFGDF....GDFFENDDLPFGEPPGTAESQALmfsgpDCGEV..ANTPIGVMDVVDQMllpaafpSFE.SFNP.....SPAV.AIDESAsksqeathgaLALvpvnctppsSSGeFD.........Y...LIKA.......EALL..................tFaPEYGAVETPTsefsssifrrpycpksrqVESSNpssnkyAYGATPPPSPFFEGSNEKTGMQVNLKTGAGRNDTKKYYTLVESG....KVHLDRRTF..IFNESHPT.SEVMV..........PSPLLTSNSSNTVQRkmSDCILGAENFLFSMKTVLAteveciMFQasmcsmrhmllSYGNPTPVNlSRLSGSTVLN..QL............HGDAStMTDSISARYEVKKKESIPvriagdmdgGLLDgHLNAPvGVWRSVGVP..KLTKHTSSPNIEVSASlpHHSFSEEGILSYRQRQQPlqelldgmallvqqaTSFVDV...ALDA.DCGdgpYGWlalQEHWR
709- 1314 (864.82/498.46) RGFSCG.PSMVHAGCgGALAACHSLDIAGVELVDPLSADIHS..........SAVISLLQSEIKTALK.SAF....GNlDGPLCV.TDWCKG...RFQ.SGDGATTCD...GLIGESTLSGCKDSSSIVTLPVGEPMSPALSC.AAGSSSLKASSTLDGAKVDETSQRR........................SNQEIEPELRFRIKPTvfvLPSPAILVGYQDDWLKTSASSL..QLWEKApFEPYASPKPIS.YY......VVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQSLGNHMEM.....DAGKS..LYTGFVLLDCPQSM.......KIE.SSNA.....SLVG.SISDYF..........LSL.........SNG.WD......LASYLKSLSKAVKALKIGPSLLtnpkegsssscmviyvvcpF.PEPAAVLQTV..................IESSV......AIGSIIPPADRERRSMLLGQVRKALSSLAAVDDASASNVLVLSGfstpKLVLQIVTVdaIFRVTSPAlNELIIlketaftvynKARRISKGSSNDVQS..SSASSRSHSALTQMSSVPA......MWN...........SLPREADID.SRLRAGTWDNswQTmrtgsltcdpnrNGDFS.LQDEIHYMFEPLFILSEP.........GSLE.HAVTP.AVFGNLGSEslKMQSDDSSGSFMQSAS..SAGSVDTGSSSQHDGSEP...............TGFGSShqkALPSlHCC...YGW...TEDWR
1345- 1660 (263.37/122.10) KGLQCLfVQVLQQGC.QILQSCSSPDTGSVKPRDFVITRIGSffeleyiewqRAIYSVGGSEVK...............KWPLQLrRSMPDG...MAA.STNGASLQQqemSLIQERT............LP....SSPSL....LYSPLLKASGYMKGG.LGQPSSRKqlmggytvvdnsrgmlqwvqsitlVTISVDHSLHLMFQAD...MPSPG...G........NGSSVgpSIYREG.ISPVKSLGSTSaSY......ILIP......SPSMRFLPPTPLQHPTC.LTAESP.PLA.HLLH.....SKGSAipLSTGFVVSKAVPSM.......RNDyRSDAreewpSVLSvSLIDYY..........GDN.........NMT.EDkmyrgiMKQGGRTLGTDGKDLEIGTQLI....................................................................................................................................................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
|