<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22959

Description Uncharacterized protein
SequenceMATPPVLPQLPTNFEANPPPMGPTPPQQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRSQSIHPLDLSHLLKMTGTEYMLSEVMEPHLFVFRKQKRDSAEKVTPMLTYYVLDGSIYQAPQLCSVFAARVGRALYYISKAFGTAASKLEKIGYVDSENEGAASESKTGKEVIDFKEVKRIDHILASLQRKLPPAPPPPSFPEGYVPQPTTEEEKGPETQQGGEPQLPSVDPIIDQGPAKRMKF
Length259
PositionHead
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.10
Grand average of hydropathy-0.490
Instability index58.75
Isoelectric point5.33
Molecular weight29018.77
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coactivator activity	GO:0003713	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22959
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.73|      12|      16|     151|     166|       1
---------------------------------------------------------------------------
  151-  163 (17.38/20.45)	YYISKAFGtAASK
  169-  180 (21.35/ 9.20)	YVDSENEG.AASE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.15|      14|      30|      38|      51|       2
---------------------------------------------------------------------------
   38-   51 (29.25/25.51)	CFRDQLW.LNTYPLD
   69-   83 (22.90/18.26)	CNNEQLRsQSIHPLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.11|      18|      18|     214|     231|       3
---------------------------------------------------------------------------
    8-   22 (28.66/10.23)	PQLPTNFEAN.P...P..PMG
  214-  231 (33.23/12.82)	PSFPEGYVPQ.PTTEE..EKG
  232-  252 (25.22/ 8.28)	PETQQGGEPQlPSVDPiiDQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.33|      16|      31|      93|     108|       5
---------------------------------------------------------------------------
   93-  108 (30.28/23.61)	TEYMLSEVM..EPHL.FVF
  124-  142 (19.05/12.19)	TYYVLDGSIyqAPQLcSVF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22959 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SLQRKLPPAPPPPSFPEGYVPQPTTEEEKGPETQQGGEPQLPSVDPIIDQGPAKRM
202
257










Molecular Recognition Features






MoRF SequenceStartStop




1) KEVKRIDHILASLQRKL
2) VDPIIDQGPAKRMKF
191
245
207
259