<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22954

Description Uncharacterized protein
SequenceMDMDSRGDYSVERNEHRELLRKKNTIMSMEVLAKLMESRKAVVLLRLVHFNMPEKFHGLLQRLWFSEANKLASSSMKPASQFFERFSASIRNVCDFEYQLNKGQLVRMLTDIRQPNKRLSYCNSESVQSACWAPFDIYLEHIMDGKQLLITSGVSMLTETIMLLQVFNRASWQETFLALWLSALRLVQREHDPLEGPIPHLESRLCILLTIVPLAIANIMDDEAKFCSSSLQGAAKSGFIEIDGHENQVDGKGQTSRKNGLISSLQVLGQFSGLLCPPASVIGAANAAAVKAASFISNSKSARGDSVCGTHSDSDINAGGNLRHLIIEACIARKLIDTSVYYWPGYVSASVISFIDLPPAQKSPWVIFMEGTPFSNSLVNFLLATPAPSLAEIEKLYDIALNGSVEERSAAAKILCGASLSRGWNIQEHVLHYVVKLLSPPKPSTHTGQRNHLIDYMPMLSAILSGASSIDTVHVLSLHGLIPEVAASLMPLCEVFGSLMPTSSNISSKGDEPSIYMVFSSAFLFLLRLWKFYRPPIEQCLTGGGAIGGELTLEYLLLLRNGRIASHNYSAQDEINSNQVQHEYSSDKPEYVDFYPKLRAWYCQNKSCIASPLSGISTGNPVHEVANKILNMIYRKMTKSGSSSGNSSTVTSNSLCGSSPSTAEDPYQRPMLPAWDVLEAIPFVLEAILTACAHGRLSSRDLTTGLRDLIDFLPATLGTIVTYFAAEITRGIWKPVPMNGTDWPSPAAILSAVDSEIKEILAAAGVDFPCGSSGISPS
Length778
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.08
Grand average of hydropathy0.012
Instability index49.09
Isoelectric point6.19
Molecular weight85227.87
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22954
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.31|      47|      48|     106|     152|       1
---------------------------------------------------------------------------
   47-   78 (23.62/ 9.66)	.......................LVH...FNMPEKfhgllqRLWFSEANKLASSSMKP
   86-  134 (75.84/46.30)	FSASIRNVCDFEyQLNKGQlVRMLTD...IRQPNK......RLSYCNSESVQSACWAP
  135-  180 (55.85/32.27)	FDIYLEHIMDGK.QLLITSgVSMLTEtimLLQVFN......RASW..QETFL.ALW..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.34|      46|     235|     354|     421|       2
---------------------------------------------------------------------------
  364-  419 (58.08/63.98)	PWVIfMEGTpfSNSLVNfLLATPAPSLAEIEKlydialNGSVEERSAAAKILCGAS
  423-  468 (84.26/35.25)	GWNI.QEHV..LHYVVK.LLSPPKPSTHTGQR......NHLIDYMPMLSAILSGAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.27|      23|     347|     291|     314|       6
---------------------------------------------------------------------------
  291-  314 (35.65/22.48)	KAASFISNSKSARGDSVCGThSDS
  639-  661 (40.62/21.16)	KSGSSSGNSSTVTSNSLCGS.SPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22954 with Med33 domain of Kingdom Viridiplantae
Unable to open file!