<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22953

Description Uncharacterized protein
SequenceMEMEMEMEKTRGGESEESERRKLILLEKVKECLSQRQDQRREESPLVWAMEVVKCLKSLKMEMPSPDLAEILVSHLCFDNNNASTWKFLQQALSSRLLSPLHVLSLLSSRVIPNRRSQPEAYRLFLELFSRYAFSLDTAVDDACRDKIINSVDAALQLSRTYEVRLSELGQLLVLFFFTVFVGLIDSTFDDMGLQIKSSDIQEGPLGTDNFQDMDMDSRGDYSVERNEHRELLRKKNTIMSMEVLAKLMESRKAVVLLRLVHFNMPEKFHGLLQRLWFSEANKLASSSMKPASQFFERFSASIRNVCDFEYQLNKGQLVRMLTDIRQPNKRLSYCNSESVQSACWAPFDIYLEHIMDGKQLLITSGVSMLTETIMLLQVFNRASWQETFLALWLSALRLVQREHDPLEGPIPHLESRLCILLTIVPLAIANIMDDEAKFCSSSLQGAAKSGFIEIDGHENQVDGKGQTSRKNGLISSLQVLGQFSGLLCPPASVIGAANAAAVKAASFISNSKSARGDSVCGTHSDSDINAGGNLRHLIIEACIARKLIDTSVYYWPGYVSASVISFIDLPPAQKSPWVIFMEGTPFSNSLVNFLLATPAPSLAEIEKLYDIALNGSVEERSAAAKILCGASLSRGWNIQEHVLHYVVKLLSPPKPSTHTGQRNHLIDYMPMLSAILSGASSIDTVHVLSLHGLIPEVAASLMPLCEVFGSLMPTSSNISSKGDEPSIYMVFSSAFLFLLRLWKFYRPPIEQCLTGGGAIGGELTLEYLLLLRNGRIASHNYSAQDEINSNQVQHEYSSDKPEYVDFYPKLRAWYCQNKSCIASPLSGISTGNPVHEVANKILNMIYRKMTKSGSSSGNSSTVTSNSLCGSSPSTAEDPYQRPMLPAWDVLEAIPFVLEAILTACAHGRLSSRDLTTGLRDLIDFLPATLGTIVTYFAAEITRGIWKPVPMNGTDWPSPAAILSAVDSEIKEILAAAGVDFPCGSSGQSPPMLPLPMAALVSLTITFKLNKSHEYIHAVVGPALENCSSGCPWPSIPIIGSLWAQKVRRWHHFIVVSCARSVLKRNKVAVAQLLRSCFSSFLGSLNDSTSLLTNQSSVSRLLGTTIAVPGVSPSLAPGFLYLRSCRTIEDIQYVNGVVIGLVTEYARELATRWTGMDSSRLKSSQASLSHAAAKAREVAILGASLLCLSGGMNLIQELYLETIPTWLLSSKKEKLGEVSAVSRILEGYAMAYMVVLSGSALWGIGPTPPAWALSRRARVVGVHMDFLVRVLEGNISLGCHPATWKAYVSCVVGLVVSFAPAWIQVVKLETLRKLASGLRGWHESELALSLLERGGVAAMGSVAELLNVIS
Length1350
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.08
Grand average of hydropathy0.075
Instability index51.33
Isoelectric point6.67
Molecular weight148358.57
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22953
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.56|      29|      31|    1222|    1251|       1
---------------------------------------------------------------------------
 1222- 1251 (48.15/33.24)	SR..ILEGYAMAYMVVLSGSALwGIGPTPPAW
 1254- 1284 (48.41/27.56)	SRraRVVGVHMDFLVRVLEGNI.SLGCHPATW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.04|      18|      31|     889|     906|       2
---------------------------------------------------------------------------
  889-  906 (29.95/19.91)	DVLEAIPFVLEAILTACA
  921-  938 (31.09/20.97)	DLIDFLPATLGTIVTYFA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.04|      16|      20|      15|      33|       3
---------------------------------------------------------------------------
    7-   22 (24.44/ 9.90)	MEKTRGGESEESERRK
   26-   41 (26.60/20.50)	LEKVKECLSQRQDQRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.37|      34|     359|     578|     632|       4
---------------------------------------------------------------------------
  582-  632 (45.44/63.80)	MEGTPFsnslvnfllatpaPSLAEIEKlydiALNGSVEERSAAAKI..LCGAS
  951-  986 (57.93/29.65)	MNGTDW.............PSPAAILS....AVDSEIKEILAAAGVdfPCGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.27|      23|     359|     504|     527|       5
---------------------------------------------------------------------------
  504-  527 (35.65/23.60)	KAASFISNSKSARGDSVCGThSDS
  852-  874 (40.62/22.22)	KSGSSSGNSSTVTSNSLCGS.SPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.44|      15|     152|     283|     297|       6
---------------------------------------------------------------------------
  283-  297 (27.72/19.29)	KLASSSMKPA..SQFFE
  438-  454 (23.72/15.19)	KFCSSSLQGAakSGFIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.66|      13|      26|     561|     573|       7
---------------------------------------------------------------------------
  561-  573 (22.67/14.64)	SASVISFIDLPPA
  588-  600 (21.99/13.95)	SNSLVNFLLATPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.16|      13|     152|    1133|    1146|      11
---------------------------------------------------------------------------
 1133- 1146 (19.09/14.48)	YVNgVVIGLVTEYA
 1287- 1299 (24.06/13.14)	YVS.CVVGLVVSFA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.36|      12|      31|    1063|    1074|      12
---------------------------------------------------------------------------
 1063- 1074 (18.52/11.61)	LKRNKVAVAQLL
 1091- 1102 (18.84/11.94)	LLTNQSSVSRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.02|      19|      47|     124|     142|      13
---------------------------------------------------------------------------
  124-  142 (29.56/22.21)	LFLELFSRYAFSLDTAVDD
  154-  172 (24.95/17.37)	AALQLSRTYEVRLSELGQL
  173-  191 (28.50/21.10)	LVLFFFTVFVGLIDSTFDD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22953 with Med33 domain of Kingdom Viridiplantae
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