<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22951

Description Uncharacterized protein
SequenceMMEDKSFKGLKVEGMTSQRQDWRAELTSEVRKKVVEKILGNLKDHYKMQASSDPEFLNRLRNIAVQFEDKTFRNSATQGSYAYTIGKKMGSFGTIKSEASQTTGLGQTSIVNDVGQSSETNAIAQFSQYLVGNNLVEQNMQPNMSPDFQSEVPGSQSSDQKLMYQLQQQEFQDQILKDKVQNISKRFAIQPDIHNRQPHQRQKHVTSQTSQNLYSQPPSASPQYQQSSFSQPSNSTMFQQNQQLRQQHDASEQRQWSMPQQNVLPSFQQPLGQQRDVSEIQHQQKMAGPQSIILNSQLHQSSSHMIQQQGVTASEQKVQKITQPVQSHQILGSQKQSGLSQEGIQPRPQTSASFHQQRSIADQQKLFQSHRSFAGSSSASAEPKSSNQLANTADGHDADYQKLQDFKQQYRPQMEYIYKNLKSLLDKETDPDQAMRYMKQVIWIEKNMPIFSLQRNQMANASKEKLQMAQQAIIKFVNYFRKKSSASVEQQADLCLQNSGQSQISQPPLNWNEKLQFHPVNLTMTNGLGSSSLTSSMQSGFLNSRPSFFSSLQYSSGMDLEQRNGPSMVQQPARKTGIISSNNIVNAFDSPFAHQTTLTQNLEQQMQKQNIQHKKEQMLIRNSQKSGSPAMESPENLHLPLISTTIHQPHSSSPRKSQLSSARMDQQTFPLASPASTPLTSTSEYVAFNQVDSQTQSHNQSTASGTPGISASPLLEEYTSSPNTSDTNQPLQRLLQAVKSLSPDVLSAAVHDIDSVVNVVDKIAGGSAERHSKGAIGEDLVSETIFHVQERNFALQHLSMKDKEMEHQSNAMASDTIGQPMDWISDFDSTATSRFNKLRTEPRNDLLNEIRHVNKLLVETTVDVDSTEDDSLPEASAGTIIKCSYTAVAVSGDFKSLSSSPMFPELTLRLLVPAEFPNSSPIILDKLPSGLSDELEDLSEKTKLRFSVALRNLSEPMSLLEIARTWDACARAVLLEHVKPLGGECFSSRYGTWENCLTA
Length999
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.713
Instability index60.28
Isoelectric point6.53
Molecular weight111668.26
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22951
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     258.20|      40|      41|     187|     226|       1
---------------------------------------------------------------------------
  190-  230 (62.31/26.12)	QPDIHN..RQPHQ.RQKHVTS.Q.....TSQNLY..SQ....P.PSASP............Q...YQQ...............ssFS.
  231-  289 (32.68/10.14)	QPSNSTmfQQNQQlRQQHDAS.E.....QRQ..W..SM....PqQNVLP............S...FQQplgqqrdvseiqhqqkmAGP
  290-  319 (35.27/11.54)	QSIILN..SQLHQ.SSSHMIQ.Q..............Q....G.VTASE............Q...KVQ....................
  323-  362 (43.59/16.03)	QP.VQS..HQILG.SQKQ..S.G.....LSQEGI...Q....PrPQTSA............S...FHQ..............qrsIAD
  363-  391 (26.82/ 6.98)	QQKLF....QSHR.S..................F..AG....S.SSASA............EpksSNQ.................LAN
  595-  639 (29.81/ 8.59)	QTTLTQ..NLEQQ.MQKQNIQhK.....KEQMLIrnSQksgsP.AMESP............E...NLH.................L..
  640-  693 (27.72/ 7.47)	.PLISTtiHQPH..SSSPRKS.QlssarMDQQTF..........PLASPastpltstseyvA...FNQ.................VDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.21|      34|     106|      30|      85|       3
---------------------------------------------------------------------------
   34-   67 (59.88/72.08)	VVEKIL.GNLKDHYKMQASSD..PE..FLNRLRNIAVQ...F
  759-  800 (40.33/16.30)	VVDKIAgGSAERHSKGAIGEDlvSEtiFHVQERNFALQhlsM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.64|      15|      17|      95|     109|       4
---------------------------------------------------------------------------
   95-  109 (24.00/16.29)	IK..SEASQTTGLGQTS
  111-  127 (19.64/11.72)	VNdvGQSSETNAIAQFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.69|      32|      53|     870|     902|       6
---------------------------------------------------------------------------
  870-  902 (50.11/37.42)	DSLPEASAGTIIKCS.YTAVAVSGDFKSLsSSPM
  925-  957 (48.58/31.39)	DKLPSGLSDELEDLSeKTKLRFSVALRNL.SEPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.29|      20|     286|     128|     152|       7
---------------------------------------------------------------------------
  128-  148 (31.09/30.04)	QYLVGNNLVEQNMQpNMSPDF
  168-  187 (33.20/15.46)	QQEFQDQILKDKVQ.NISKRF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.51|      53|     109|     696|     755|       8
---------------------------------------------------------------------------
  696-  755 (70.44/70.05)	QShnQSTASGTPGisaSPL..LEEYTSSpNTSDTN....QPLQRLLQAVKSLSPDVLSAAVhDIDS
  808-  866 (81.07/53.00)	QS..NAMASDTIG...QPMdwISDFDST.ATSRFNklrtEPRNDLLNEIRHVNKLLVETTV.DVDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22951 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LVEQNMQPNMSPDFQSEVPGSQSSDQKLMY
2) QNISKRFAIQPDIHNRQPHQRQKHVTSQTSQNLYSQPPSASPQYQQSSFSQPSNSTMFQQNQQLRQQHDASEQRQWSMPQQNVLPSFQQPLGQQRDVSEIQHQQKMAGPQSIILNSQLHQSSSHMIQQQGVTASEQKVQKITQPVQSHQILGSQKQSGLSQEGIQPRPQTSASFHQQRSIADQQKLFQSHRSFAGSSSASAEPKSSNQLANTADGHDA
3) SPFAHQTTLTQNLEQQMQKQNIQHKKEQMLIRNSQKSGSPAMESPENLHLPLISTTIHQPHSSSPRKSQLSSARMDQQTFPLASPAS
4) TSTSEYVAFNQVDSQTQSHNQSTASGTPGISASPLLEEYTSSPNTSDTNQPLQRLLQ
135
181
590
680
164
398
676
736










Molecular Recognition Features






MoRF SequenceStartStop




NANANA