<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22950

Description Uncharacterized protein
SequenceMAMVGHVPVAKTQQASPLRLVEFRMPGKMASGREVVEETVARVIEVIEEKIFVAVGKSVKECKSMLFWALQKSGGKRICIIHVHQPAQMIPFMGTKFPASKLKEQEVRAYWEIERQEMLKMLGEYLFLCRKMGVRAEKLYVEMESIEKGILELISQHGIRKLVMGAAADKRYSKNMMDIKSKKAVSVCLQAPASCHIWFICKGHLIQTRKGALDGTDTDVRPSSQQKSPNTEAGQSNIMRSQSILFGQHHHVKLTNPAQDLFRKVRSLNVNGPGGRLTTPTSPDGGPSTPSRSDADGSSDQYDALSRSTSQNSVLSSRSSSGMANVALIPLLGIEGSEIGSELSTVPHQKVDLFQSSPPSVLDGSIEDPLYDQLEQAMAEAENSRFEASEEAVRCAKEERDVVEAIRKDHKSLLEKQIEESDEMVKELEQKIISAVGLLQNYKKERDHLHKGRDYALKEAEELRRNQTEASSTHMPRFFSDFSFSEIEEATHHFDPSRKIGEGGYGNIYKGVLRQTQVAVKMLDSNSMQGPAEFQQEVNVLSKMRHPNLITLVGACPEAWTLIYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSSKPHSIVHGDLKPANILLDENFVTKLSDFGICRLLDHKEGSSNNTTICRTDPKGTFVYMDPEFVSTGELSPKSDVYSFGIILLRLLTARQALGITKEVRYALDKGTLKTLLDPLAGDWPFVQAEMLAHMALRCCEMNRKNRPDLASEVWRVLEPMKASCGTSSFSQLGSEEHFQPPSYFTCPIFQEVMRDPHVAADGFTYEAEALKGWLDSGHDTSPMTNFKLAHCDLIPNRALRSAIQGQL
Length848
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.379
Instability index50.73
Isoelectric point6.46
Molecular weight94675.17
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22950
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     234.50|      76|     205|     290|     370|       1
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  290-  370 (118.07/95.40)	PSRSDADGS.SDQYDALSRSTsQNSV..LSSRSSSGMANVAL.IPLLG.IEGSEIGSELSTVPHQKVDLFQSSPpsvlDGSIEDPL
  496-  576 (116.43/79.90)	PSRKIGEGGyGNIYKGVLRQT.QVAVkmLDSNSMQGPAEFQQeVNVLSkMRHPNLITLVGACPEAWTLIYEYLP....NGSLEDRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.32|      36|     380|      36|      72|       3
---------------------------------------------------------------------------
   36-   72 (55.38/46.26)	VEETvARVIEVIEEKIFVAVG..KSVKECKSMLF....WALQK
  418-  459 (49.95/36.27)	IEES.DEMVKELEQKIISAVGllQNYKKERDHLHkgrdYALKE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22950 with Med32 domain of Kingdom Viridiplantae
Unable to open file!