<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22946

Description Uncharacterized protein
SequenceMTVSSSVWDSVLEHTMSAQVKNSEPHLWAIQLSSSLNSAGVDLPSLELARLLVSHICFDNHVPITWKLLEKALSLNLAPPLLVLALLSTRVVPNRKLHPAAYRLYMELVKRHAFSFSALINAQNYQMTMKSIDDVVHLSQIFGVQLCEPGILLVEFVFSIVWQLLDASLDDEGLLEQSLEKNSRWLSRLQDMEIDGNENFSEKRNEHHEGLHKVNTTMAIELIEEFLKNKVTSSILYLARQNMPSHWGGFIERLQLLVVHSTALRNSKHTTPDAFLQLTSDTHRVLSREGKTISHHEFHAVMFSGSLKSSVGQCHGASHSAVWLPIDLFLEDTMDGSLVTTTSAVENLISLVKALQAVNRTTWHDTFLGLWIAALRLVQRERNTSEGLMPRVDTSLSMLLSITTLVVTNLIEEEESELIDETQQNPANQRKEKQGKLQKGLITSLQLLGDYEGLLTPPQSVSSIANQAAAKATMFISGLTVRNGYSMSINDMPVNCSGNLRHLIVEAFIARNMLDTSAYLWPGYVNARANQVPRGVPSQTTGWSSLMNGSPLTPSMINILVSTPASSLPEVEKIYEIAVNGSGDEKISAAAILCGASFVRGWNIQEHTILFIINLMSPPVPADHSGTESHLINYAPLLNVLLVGISSVDCVQILSLHGLVPLLAGALMPICEAFGSAVPEVSWTLPPTGEELSCHAVFSNAFTLLLRLWRFDHSPLDHVLGDIPPVGSHLSPEYLLLVRNSLLASFGPSTRSQLKLRRYSKILSLSVEPVFMDSFPNLKLWYRKHLECIASTFSGLVHGTPVHQIVDALLNLMFRRINRGVQPSTSGSSLSSGPGAEDAQARLKIPAWDILEATPFALDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKPASMNGTDWPSPAANLSSVEQQIKKILAATGVDVPSLSGVLWLHFLCH
Length955
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy0.095
Instability index44.21
Isoelectric point6.03
Molecular weight104893.38
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22946
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.01|      24|      33|      44|      68|       2
---------------------------------------------------------------------------
   44-   68 (39.35/27.57)	PSLELArLLVSHICFDNHV.PITWKL
   80-  104 (33.66/18.47)	PLLVLA.LLSTRVVPNRKLhPAAYRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.25|      39|      65|     426|     467|       4
---------------------------------------------------------------------------
  426-  447 (24.58/ 9.17)	...........................................PANQRKEKQG..KLQK....G..LITSLQL
  450-  514 (37.76/25.88)	DYEGLLTPPQsVSSIANQaaakatmfisgltvrngysmsindmPVNC....SG..NLRHliveA..FIARNML
  515-  556 (47.90/22.81)	DTSAYLWPGY.VNARANQ........................vPRGVPSQTTGwsSLMN....GspLTPSM..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.80|      44|     582|     271|     325|       5
---------------------------------------------------------------------------
  271-  316 (75.81/43.31)	T.PDAF..LQLTSDTHRVLSREGKTisHHEFHAVMFSGSLKSS.VGQCHG
  362-  384 (22.68/ 7.63)	TwHDTF..LGLWIAALRLVQRERNT.........................
  773-  807 (46.31/21.26)	...DSFpnLKLW.......YRK.....HLECIASTFSGLVHGTpVHQIVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.48|      34|      65|     618|     651|       6
---------------------------------------------------------------------------
  618-  651 (58.21/32.76)	PPVPADHSGTESHLINYAPLLNVLLVGISSVDCV
  686-  719 (58.73/33.11)	PPTGEELSCHAVFSNAFTLLLRLWRFDHSPLDHV
  724-  743 (23.54/ 8.98)	PPV.GSHLSPEYLLLVRNSLL.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.33|      16|     279|     652|     667|       9
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  652-  667 (27.80/13.88)	QILSLHGL.VPLLAGAL
  932-  948 (22.53/ 9.96)	KILAATGVdVPSLSGVL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22946 with Med33 domain of Kingdom Viridiplantae
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