<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22945

Description Uncharacterized protein
SequenceMEIDGNENFSEKRNEHHEGLHKVNTTMAIELIEEFLKNKVTSSILYLARQNMPSHWGGFIERLQLLVVHSTALRNSKHTTPDAFLQLTSDTHRVLSREGKTISHHEFHAVMFSGSLKSSVGQCHGASHSAVWLPIDLFLEDTMDGSLVTTTSAVENLISLVKALQAVNRTTWHDTFLGLWIAALRLVQRERNTSEGLMPRVDTSLSMLLSITTLVVTNLIEEEESELIDETQQNPANQRKEKQGKLQKGLITSLQLLGDYEGLLTPPQSVSSIANQAAAKATMFISGLTVRNGYSMSINDMPVNCSGNLRHLIVEAFIARNMLDTSAYLWPGYVNARANQVPRGVPSQTTGWSSLMNGSPLTPSMINILVSTPASSLPEVEKIYEIAVNGSGDEKISAAAILCGASFVRGWNIQEHTILFIINLMSPPVPADHSGTESHLINYAPLLNVLLVGISSVDCVQILSLHGLVPLLAGALMPICEAFGSAVPEVSWTLPPTGEELSCHAVFSNAFTLLLRLWRFDHSPLDHVLGDIPPVGSHLSPEYLLLVRNSLLASFGPSTRSQLKLRRYSKILSLSVEPVFMDSFPNLKLWYRKHLECIASTFSGLVHGTPVHQIVDALLNLMFRRINRGVQPSTSGSSLSSGPGAEDAQARLKIPAWDILEATPFALDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGIWKPASMNGTDWPSPAANLSSVEQQIKKILAATGVDVPSLSGVLWLHFLCH
Length764
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy0.062
Instability index44.42
Isoelectric point6.11
Molecular weight83395.67
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22945
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.25|      39|      65|     235|     276|       2
---------------------------------------------------------------------------
  235-  256 (24.58/10.17)	...........................................PANQRKEKQG..KLQK....G..LITSLQL
  259-  323 (37.76/28.14)	DYEGLLTPPQsVSSIANQaaakatmfisgltvrngysmsindmPVNC....SG..NLRHliveA..FIARNML
  324-  365 (47.90/24.84)	DTSAYLWPGY.VNARANQ........................vPRGVPSQTTGwsSLMN....GspLTPSM..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     209.60|      66|     107|     375|     447|       3
---------------------------------------------------------------------------
  375-  447 (96.28/85.70)	SSLPEVEkiYEIAVNGsgdEKISAAAILCGA..SFVRGWNIQEHTILFIINLMsPPVpADHSGTESHLINYAPLL
  485-  552 (113.33/74.68)	SAVPEVS..WTLPPTG...EELSCHAVFSNAftLLLRLWRFDHSPLDHVLGDI.PPV.GSHLSPEYLLLVRNSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.72|      10|      21|     562|     572|       4
---------------------------------------------------------------------------
  562-  572 (13.23/12.31)	QLKLrRYSKIL
  586-  595 (20.49/13.27)	NLKL.WYRKHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.33|      16|     279|     461|     476|       5
---------------------------------------------------------------------------
  461-  476 (27.80/13.89)	QILSLHGL.VPLLAGAL
  741-  757 (22.53/10.03)	KILAATGVdVPSLSGVL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22945 with Med33 domain of Kingdom Viridiplantae
Unable to open file!