<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22942

Description Uncharacterized protein
SequenceMDDDHLRLLNDASKDALSGIRPSRLSSPSRPTGSRISASNVKPIGARSSPAGSVVRVAGSSPLATTSVSHTAGDTAISLGSSHDVSIHEKNPRKRTVLDMLSMIPSLQDIDAKAGFSKRRRTSESAHFQKVSSQMLVSSEMVYKNERYSYGNLIAEANKGNSPSNIYVSALLHMVRHCSLSIKHARLTSQMDDMDIPYVEEVGLRSASSNIWFRLPLARGDSWQHICLRLGRPGSMHWDVKINDQHFRDLWELQKGSSGTPWGSGVHIANASDVDSHIRYDPDGVVLSYQSVESDSIKKLVADIQRLSNARMFALGMRKLLGVRADEKLEESSANSDLKVPIGGKNAPEGADKLFEQMRRAFRIEAVGLMSLWFSFGSGVLARFVVEWESGKEGCTLHVLPDQLWPHTKFLEDFINGAEVASLLDCIRLTAGPLHALAAATRPARAGPAPAVPGATATLASMPKQAGYIQSQGLLPSSLVNHISQPTSGPVSNVSSSTGPLGNHNPHNVAMLAATGRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKHFAVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQELNGLDPGFAGGQQTVGLGNSNNPNPSSCSQLSSVNGNRVNLPNSSATSRAANQVAALNRVGNAVPGSSNLAVLSSGLPIRRSPGVGVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPGLLKEILGSILKENEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQQQNNAAAQEELTQSEIGEICDYFSRRVASEPYDASRVASFITFLTLPISVLKEFLKLIAWKKGLAQAQGGEMAPGQKPRIELCLENHTGLNVAENSSAAKSNIHYDRPHNSVDFALTVVLDSAHIPHINAAGGAAWLPYCVSVRLRYLFGETMNVSFLGMEGSHGGRACWSHVDDWEKSKQRVARTVEVHGSSTGDAQGRLRVVAESVQKNLHMCLQGLRDGSGVTASSGTT
Length1031
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.179
Instability index47.44
Isoelectric point9.09
Molecular weight110969.80
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22942
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     240.25|      50|      51|     473|     522|       1
---------------------------------------------------------------------------
  422-  469 (51.93/25.61)	.....SLLD.C...............I.RLTA..GP..LHALAAA..TrparaGP.APAVPGATATLASM.PKQAGYI
  473-  522 (86.83/47.98)	GLLPSSLVN.H...............ISQPTS..GP..VSNVSSS..T.....GPLGNHNPHNVAMLAAT.GRGGPGI
  524-  576 (50.11/24.44)	...PSSLLPiD...............VSVVLR..GPywIRIIYRKhfA.....VDMRCFAGDQVWLQPATpPKGGPSV
  599-  662 (51.38/25.25)	GLDPGFAGG.QqtvglgnsnnpnpssCSQLSSvnGN..RVNLPNS..S.....A..TSRAANQVAALNRV.GNAVPG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.18|      39|     353|     372|     417|       2
---------------------------------------------------------------------------
  374-  417 (63.31/50.41)	FSFGSGVLARFVVEWESGKEGCTLHVlpDQLWPHTKFledFING
  731-  769 (65.87/33.02)	FAQLPGLLKEILGSILKENEGALLNL..DQEQPALRF...FVGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     275.24|      92|     727|     158|     279|       4
---------------------------------------------------------------------------
  158-  279 (128.10/126.74)	NKGNSPSNIyvsallHMVR.HCSLSIKharLTSQMDDMDIP............YVEEVGLR...SASSNIWFrLPLARGDSwQHIclrlgrpgsmHWdvkindQHFRDlWElqKGSSGTPWGSGVHIANASDVDSHIR
  894- 1001 (147.14/90.47)	NSSAAKSNI......HYDRpHNSVDFA...LTVVLDSAHIPhinaaggaawlpYCVSVRLRylfGETMNVSF.LGMEGSHG.GRA..........CW......SHVDD.WE..KSKQRVARTVEVHGSSTGDAQGRLR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.99|      16|      24|     665|     684|       5
---------------------------------------------------------------------------
  665-  684 (20.91/23.80)	NLAVLssGLPirRSPGVG...VP
  692-  710 (26.08/14.03)	NTAII..GLG..DDGGYGggwVP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22942 with Med14 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSGIRPSRLSSPSRPTGSRISASNVKPIGARSSPAGSVVRVAGSSPLATTSVSHTAGDT
17
75










Molecular Recognition Features






MoRF SequenceStartStop




NANANA