<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22939

Description Uncharacterized protein
SequenceMLSSQLPDIAEASSSERVYVALGNSIEKAVSLLNWVFESLGTRQICLLHVHRPSPLIPTLLGKLPASQANAEVVSAFRREENERTKKLFDYYLIICRRAKVEATIVTIESDQVHKGIVELVNRHGVRKLVMGTVKENCMKVKKSSCKENYAAKHAPLFCEIWFINKGKCIWTREASENSNLLQGSFSSTISSCASGCTSTEMRVSSGSDPKVEEESSYSHIEEVSLEAEALGNEAFEELLKCKTLELEAMEAFSKVKIYESALVHEVKLRKEAEDALNNTIQDQEKLLKEKDEVARKLERTMRNVALLDIRAQEANHRCEEASGELKLIQTSILSLRQEEQRIRRQKMEAVHWLERWRSPGQAGTANCNGFLGITEELPELAEFSLSDLQTATCNFSESFKLGQGGCGQVYKGEMLGRTVAIKRLHPNNMQGQSEFQKEVQVLGKLQHPHLVTLLGACPEAWSLVYEYLPNGSLQDRLFQKNNIAPLTWKIRTRIIAEISSALCFLHSSKPEKIVHGDLKPQNILLNSELSCKICEFGICRLVTEDSLYQPSFHWSTIPKGSFPYTDPEFQRIGVLTPKSDIYAFGVIILQLLTGKPPAGLVGEVRRTRKLTSILDPSAEWPMIVARRLVDLALQFCELSSRGRPDLTPTLVRELEHLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLANGRETSPMTNLRLDHLHLTPNHALRLAIQDWLCKY
Length736
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.275
Instability index45.47
Isoelectric point6.44
Molecular weight82944.31
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22939
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.49|      22|     207|       3|      24|       1
---------------------------------------------------------------------------
    3-   24 (38.25/27.59)	SSQLPDIAEASSS...ERVYV...ALGN
  206-  233 (28.24/18.34)	SGSDPKVEEESSYshiEEVSLeaeALGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     202.77|      92|     525|      60|     181|       2
---------------------------------------------------------------------------
   62-  103 (-6.81/20.17)	..............................................................................GKLPASQANaeVVSaFRREENErtkklfdyyliIcRRAKVEA
  104-  176 (79.61/68.54)	TIVTI.ESDQVHKgiVELvnRHGVRKLVMGTV..KENCMKVK.KSSCKENYAAKHAPLF.CEIWFINKgKCiwtREAS..........................................
  254-  350 (129.97/76.73)	SKVKIyESALVHE..VKL..RKEAEDALNNTIqdQEKLLKEKdEVARKLERTMRNVALLdIRAQEANH.RC...EEASGELKLIQTS..ILS.LRQEEQR...........I.RRQKMEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.41|      15|      43|     284|     305|       6
---------------------------------------------------------------------------
  268-  282 (24.28/15.69)	KLRKEAEDA...LNNTIQ
  286-  303 (19.12/20.35)	KLLKEKDEVarkLERTMR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22939 with Med32 domain of Kingdom Viridiplantae
Unable to open file!