<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22937

Description Uncharacterized protein
SequenceMCCFQCHSRVHLIWYVMLAVGSVSMNGGRISQLLLNGYPVSLQWLSSKSSTPTSSKSAFEEKFLSQHSQTSARWPNFLCVCSVFSSGSVQLHWSPSQNNTSPKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMASVGNGVPPSVKPPNWSGFAPLAAYLFNWQEHLMSEVKQGKKQTDEDFTDTITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSVQPVVLHPIFGNPTSGFGGQAPMQTVWVSKVDTSIPPTNDFKNYQPAAAGPISDVRKTSDSGAEKTKRVIFDPSDLPSDVRTLARIVYSAHGGEIAVAFLGGGVHIFSGTNFTLVDNHQINVGSTIAAPAFSSTSCCSASVWHDTSKDHTVLKIIRVLPPAVPSSQVKANSAIWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPTSQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGRGIESALINPSALVSEPWQASGETLSGIDPEAMTVEPNLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVTSPTQSSASPAPSQGGQSGSTSSTGSTQMQAWVQGAIAKISSTTDGVTGSTPNPISGPSSVMPISINTGTFPGTPAVRLIGDCHFLRRLCQLLLFCFFFRRTQLPRFAGSAQRNSTDTNVQKPQSGAPGKVEEINTVTSKPAPAMVRSDEGQTARGGQVMPGAKPVEDGPAGRHRVGSGNAGQGYSFEEVKVLFRILMDLCRRTATLAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDAEDMGSDDTLKLNSDPLDFSSLENCDVYYSAHGLWPRKRRLSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAMWKTGLEGVWYKCIRCLRQTSAFASTGAAANPPNQNEREAWWISRWAYGCPMCGGTWVRVV
Length1070
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.08
Grand average of hydropathy-0.146
Instability index38.51
Isoelectric point6.80
Molecular weight115005.65
Publications
PubMed=16973872

Function

Annotated function 
ECO:0000256
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP22937
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     169.04|      38|      41|     295|     335|       1
---------------------------------------------------------------------------
  142-  178 (55.06/24.09)	.PstVVVWEVTP.GPGNGFQA.TPMASV.GNGVPPSVKPPN
  295-  332 (71.45/41.50)	QP..VVLHPIFG.NPTSGFGGQAPMQTVWVSKVDTSIPPTN
  338-  370 (42.52/18.69)	QP..AAAGPISDvRKTSDSGAEKTKRVIF....DPSDLP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.22|      19|      39|     650|     668|       2
---------------------------------------------------------------------------
  650-  668 (34.01/15.69)	VTSPTQ..SSASPAPSQGGQS
  690-  710 (27.22/11.07)	ISSTTDgvTGSTPNPISGPSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.04|      23|      62|       7|      30|       3
---------------------------------------------------------------------------
    7-   30 (38.57/27.08)	HSRVHLIWYVMLAVGSVsMNGGRI
   67-   89 (44.47/26.98)	HSQTSARWPNFLCVCSV.FSSGSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.45|      38|      44|     981|    1023|       4
---------------------------------------------------------------------------
  970- 1016 (56.80/39.74)	GLWPRkrrlseRDAAFglnTSVGLGAYLGIMGSRRDVVTAMWKTGLE
 1017- 1060 (67.65/43.21)	GVWYKcirclrQTSAF...ASTGAAANPPNQNEREAWWISRWAYGCP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.92|      20|      44|     228|     247|       6
---------------------------------------------------------------------------
  228-  247 (35.49/19.44)	YVSPEAAAQSAATT.....TWGSGV
  270-  294 (33.43/17.87)	YMSPYDPDEGPLITgwrvqRWESSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.00|      17|      40|     460|     479|       7
---------------------------------------------------------------------------
  460-  479 (25.93/28.46)	VKANSAIwerAIAERFWWSL
  501-  517 (28.07/18.61)	VSLNSVI...AVLDADFHSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.92|      39|      60|     520|     558|       8
---------------------------------------------------------------------------
  520-  558 (66.54/48.91)	SQHRQQYGPSLDRI..KCRLLEGTNAQEVRAM...VLDMQARLL
  578-  621 (56.37/40.14)	SEPWQASGETLSGIdpEAMTVEPNLVPSIQAYvdaVLDLASHFI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22937 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGSAQRNSTDTNVQKPQSGAPGKVEEINTVTSKPAPAMVRSDEGQTARGGQVMPGAKPVEDGPAGRHRVGSGN
2) GTGSNRNMVTSPTQSSASPAPSQGGQSGSTSSTGSTQ
758
642
830
678










Molecular Recognition Features






MoRF SequenceStartStop




NANANA