<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22936

Description Uncharacterized protein
SequenceMMFPIDPNGSQTQSNIDEQRNCILIAASNPHPLPTPVYRPQIQNLEQIENIDAQNESRLSDAETVAKSFPQCSVSLSIICPKQLPKLRSIYNAGKRNSRAADPPVDSVKNPHFLVLISENFMEARAALSLPGVTSLTSNQTPVKVDIASVTSVTGPAPTSIPSVNGSITNRPTISVGNVPTATVKVEPSTITSMANGPTFPHNPSVPRPASQGVPILQTSSPSTTTQDMATSGDDVQDLKPNVSVMTQSARPGPPAAANVSILNNISQARQVMNSAGLSGGTSLGLPSINQTSVAMHMSNMISSGMASSVPAAPTVFSSGQPGVSSITGSGTLTGTTQIGPNSGLGSFTSATSNVSGNSNLGRISQPMGNLQAGVSIGQSAPGMSQGNISGAQMVQSGMGANPNTMSGLGPSGVSSGLNTMIPTPGMSQQVQSGMQPLGANNNSADNLSMSQQTAGGLQPPQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQMQMQRQQQQQQMQQQQQQQQHPQLQQQQHQQQLPQLQQQQLSLLQQQQLSLLQQQQQLPQLQQQQMAGTGMGQTYVQGPGRPQLVSQGQVSSQGPANMPGGGFMS
Length698
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.384
Instability index58.79
Isoelectric point9.30
Molecular weight73820.42
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22936
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.22|      22|      22|     609|     630|       1
---------------------------------------------------------------------------
  590-  610 (34.06/10.62)	QQQQMQMQRQQQQQQMQQ...qQ....Q
  611-  638 (37.49/12.42)	QQQHPQLQQQQHQQQLPQLQqqQlsllQ
  639-  657 (36.66/11.98)	QQQLSLLQQ...QQQLPQLQ..Q....Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.31|      15|      15|     332|     346|       2
---------------------------------------------------------------------------
  332-  346 (27.13/10.51)	TLTGTTQIGPNSGLG
  405-  419 (23.18/ 7.74)	TMSGLGPSGVSSGLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.02|      14|      15|     168|     181|       3
---------------------------------------------------------------------------
  168-  181 (26.03/15.24)	ITNRP.TI.SVGNVPT
  184-  199 (15.99/ 6.18)	VKVEPsTItSMANGPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     161.14|      39|      69|     211|     253|       4
---------------------------------------------------------------------------
  211-  233 (27.22/ 8.30)	.....................SQGVPILQTSSPSTTTQDMATSG
  236-  277 (46.70/19.87)	VQDLKPNVSvMTQSArPGppaAANVSILN..NISQARQVMNSAG
  278-  305 (33.06/ 7.20)	...LSGG.............tSLGLPSINQTSVAMHMSNMISSG
  368-  398 (54.15/17.82)	MGNLQAGVS.IGQSA.PG.........MSQGNISGAQ..MVQSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.88|      24|      43|      25|      65|       5
---------------------------------------------------------------------------
    8-   34 (34.12/30.29)	NGSQTQsNIDEQRNC................ilIAASNPHPLP
   44-   85 (30.76/21.23)	NLEQIE.NIDAQNESrlsdaetvaksfpqcsvsLSIICPKQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     159.63|      42|      43|     426|     467|       6
---------------------------------------------------------------------------
  426-  467 (76.44/34.18)	G.MSQQVQSGMQP.....LGANNNSADNL...SMSQQT.AGGLQ..........PPQSKYVK
  471-  511 (49.03/19.45)	GnLSGQRQ.G.QPvfitrLEGYRSAS........ASET.LAANW..........PPTMQIVR
  512-  558 (34.15/11.46)	L.ISQDHMNNKQY.....VG.K...ADFLvfrAMNQHGfLGQLQekklcaviqlPSQ.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22936 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGMGQTYVQGPGRPQLVSQGQVSSQGPANMPGGGFMS
2) NMISSGMASSVPAAPTVFSSGQPGVSSITGSGTLTGTTQIGPNSGLGSFTSATSNVSGNSNLGRISQPMGNLQAGVSIGQSAPGMSQGNISGAQMVQSGMGANPNTMSGLGPSGVSSGLNTMIPTPGMSQQVQSGMQPLGANNNSADNLSMSQQTAGG
3) QQMQMQRQQQQQQMQQQQQQQQHPQLQQQQHQQ
4) TGPAPTSIPSVNGSITNRPTISVGNVPTATVKVEPSTITSMANGPTFPHNPSVPRPASQGVPILQTSSPSTTTQDMATSGDDVQDLKPNVSVMTQSARPGPPAAANVSILNN
661
300
592
154
698
457
624
265










Molecular Recognition Features






MoRF SequenceStartStop




NANANA