<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22935

Description Uncharacterized protein
SequenceMDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKVAVRFEEKIYTAATNQSDYLRKISLKMLTMETKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSTNQPQACQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQYLYQQQIQQQLLKQKLQQGNHPHSHVQSHIHQQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMLQQHPQSVLRQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLTGQQNIVGDLQQQLGQQNNLQNLQQQQLMAQQNNLSSMHQQQLGPQSNVTGLQQQQLLGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSALLPNQGQQSHSQLPQQQLTAQIQSQPGQLQQQSNPLQHDLQQRLQASGSLLQQSNVIDQQKQLYQPQRALPETSSTSLDSTAESGHANGADWQEEIYQKIKVMKETYLPEINEMYQRIATKLQQHDPLPQQPKSEQLEKLKVLKVMLERLITFLQVSKNNITPNFKEKLGFYEKQIVGFLNPSRYRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQKNLVSISQPTKVNTLSTQSGASMLQPNIPLQSNSNMIQHQHLKQQQQQHEQQMLQTQQLKRLQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLLNTGNIVHQPSVAQAPAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQSLECLIKAVKSLSPKALSASVGDIGSVVSMIDRIAGSAAGNGSRAAAGEDLVAMTGCHLLSFLSFLFFTCFSQHGNSRE
Length981
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.782
Instability index71.04
Isoelectric point9.29
Molecular weight108149.97
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22935
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     961.74|     126|     126|     195|     320|       1
---------------------------------------------------------------------------
    7-  157 (107.57/16.21)	.........RTQLQPDSRQRI.............vnkimetlKRH..............LPF...SGQ.EglqelkkvaVRF.EEK...IYT...AATNQSDYLRKI..SLKM...LtmETKSQntiptgNGNKPLDPGASHsmppqVHNQGQ......SLPIsL...STN..........QPQACQQLSQNMQNSMssngVQS.SAGLQSA.....MP...SVSSLTQT...I
  158-  299 (199.86/37.09)	....PNTV.GQNANMQSISGVsqnpvgnsmgqgipsnmfvnsQRQ..............MPG...RQQ.V.........VPP.QQQ...QQS...QNPQQYLYQQQI..QQQL...L..KQKLQ......QGNHPHSHVQSH.....IHQQQQ......QQNL.L...QPN..........QLQSGLQTSTVMQPSM....MQT.VSGLQQN.....QP..SSVQQSTQP...M
  300-  430 (147.77/25.31)	LQQHPQSVLRQQQQPQQSAGI....................hQQQ..............TPM...MQQpL.........LPP.QQQlmgQQS....NTTN.MSQNQLtgQQNIvgdL..QQQLG......QQNN....LQ.........NLQQ......QQLM.A...QQN..........NLSSMHQQQ..LGP......QSN.VTGLQQQqllgaQPgnSSM.QSNQHslhM
  431-  517 (115.65/18.04)	LQQ.PKVTL..QQQAQQSGSA.................llpnQ........................................GQQ...SHS...QLP.....QQQL..TAQ..........................IQSQ.....PGQLQQ......QSNP.L...QHD...........LQQRLQAS....GSL....LQQ.SNVIDQQ............KQLYQP.qrA
  518-  653 (127.47/20.71)	LPETSSTSLDSTAESGHANGA.....................DWQeeiyqkikvmketyLPEineMYQ.R.........IAT.KLQ...QHD...PLP.....QQPK..SEQL...E..KLKVL......K.....VMLERL.....ITFLQV......SKNN.I...TPNfkeklgfyekQIVGFLNPSRYRKP..........IPNLQQG.....QP..P..QPRIQP...M
  654-  778 (125.69/20.31)	..QQPQSQV.PQLQSHENQLI....................pQLQ..............SMN...TQG.S.........VPQmQQN...NMSsllHNSLSTLSGDST..SQSN...M..MNPIQ......PGSNLDSGQGNA.....LSSLQQtpvgsvQKNL.VsisQPT..........KVNT...LSTQSGASM....LQ...............P..NIPLQSNSN...M
  779-  875 (137.73/23.03)	IQHQH...LKQQQQQ.....H.....................EQQ..............MLQ...TQQ.L.........KRL.QQH...QNL...MQNQQ.MQQQQL..HQQA...P..SPMPG......DSDKPVSGISS.....................L.L...NTG..........NI........VHQPSV....AQApAPSLAIG.....TP...GI..SASP...L
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22935 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQLYQPQRALPETSSTSLDSTAESGHANGA
2) LKQKLQQGNHPHSHVQSHIHQQQQQQNLLQPNQLQSGLQTSTVMQPSMMQTVSGLQQNQPSSVQQSTQPMLQQHPQSVLRQQQQPQQSAGIHQQQTPMMQQPLLPPQQQLMGQQSNTTNMSQNQLTGQQNIVGDLQQQLGQQNNLQNLQQQQLMAQQNNLSSMHQQQLGPQSNVTGLQQQQLLGAQPGNSSMQSNQHSLHMLQQPKVTLQQQAQQSGSALLPNQGQQSHSQLPQQQLTAQIQSQPGQLQQQSNPLQHDLQQRLQ
3) METKSQNTIPTGNGNKPLDPGASHSMPPQVHNQGQSLPISLSTNQPQACQQLSQNMQNSMSSNGVQSSAGLQSAMPSVSSLTQTIPNTVGQNANMQSISGVSQNPVGNSMGQGIPSNMFVNSQRQMPGRQQVVPPQQQQQSQNPQQ
4) SRYRKPIPNLQQGQPPQPRIQPMQQPQSQVPQLQSHENQLIPQLQSMNTQGSVPQMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTPVGSVQKNLVSISQPTKVNTLSTQSGASMLQPNIPLQSNSNMIQHQHLKQQQQQHEQQMLQTQQLKRLQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLL
509
230
73
631
538
493
218
844










Molecular Recognition Features






MoRF SequenceStartStop




1) RYRKPI
632
637