<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22933

Description Uncharacterized protein
SequenceMSNIFESPGPLHDITVCWIDQHEVCNVEGLKRLQLLIVELIHSGIFSPQVYVRQLIISGIMDAAGPPADLDRRKRHYRVLKQLPGRFVHDVLEDARIAEGSELSEAMRIYSNERRLLLHGFFCERYQNSVKSNLSVKKPKHHPPIAGKDGASPSSFEQWKNTQSRPSAKVKNEMDIEELKASISALLQLPICSTSSDTGLDESQGSVKRPAESIGSKMDVVETPGCEDCRKAKRQKLSEERNSYLQGHSPISDDEDTWWVRKGAKPLDSSKVDPPPKSSKQVSKGRQKVVRKTQSLAHLAAARIEGSQGASTSHFCDNKISCPHHRTGIEGDNLRSMDGMGTMYGGDIVSIGKSLKQLRPVEKRTITVWLIAVVRQLVEETEKSAVKASQFSRSLVNVDDRSSVRWKLGDDELSAILYLLDICCDLVPAAKLLLWLLPKVLSNPNSTIHSGRNSMMLPRNVENHACEVGEAFLLSSLRRYENIIIATDLIPEVLSTTMHRVAALLASNGRISGSAALIYSRHLLRKYSDVPSVLEWEKSFKASCDKRLLSELEIGRSLDADFGFPLGVPAGVEDFDDFFRQKISGSRLSRVGMSMRDVVQRNIDDAFHYFGKERKLFGAGTAKVPGMEKSDDTYQIAQQIIMGLMDCMRQTGGAAQEGDPSLVSSAVSAIVNNVGPTIAKMPDFSPGSNYSNASAGTGLLNFARRILRIHINCLCLLKEALGERQSRVFEVALATEASSALATAFAPGKASRSPFQLSPESHDSSGNIANEILNNSAKAAGRTKSAAAISGLVVGAIIHGVTTLERMVTVFRLKEGLDVIQCIRNAKSNSNGNARSFTVFKMDNSIEVYVHWFRLLVGNCRTVSDGLIVELLGEPSLVALSRMQRLLPLSLVFPPAYSIFAFVIWRPFSATREDIHQLYRSLTMAIGDAIKHLPFRDVCLRDSQGFYDLIAADSSDAEFASMLELNGLDMRFKTKAFVPLRGRLFLNAIVDCKLPHSVFVQDDGNRASGHGGSKVQHAENEIKLLDKLVNVLDALQPAKFHWQWVELRLLLNEQALIEKLETHDISLADAIRSSSPGPEKEAASENENNFIEIILTRLLVRPDAAPLFSELVHLLGTSLENSMLLQAKWFLGGHDVLFGRKTIRQRLINIAESKGLSTKAHFWKPWGWSNSGFDPVMNRGDKKKFEVPSLEEGEVVEEGTETKRSGKGSFPVFESEGSSLFQQNVTERALVELVLPCIDQGSDDSRNTFATDLIKQLNNIEQQINSVTRGTSKQTGTASSGLEGPANKSNNRKGIRGGSPGLARRTAAAADSTLPSPAALRASMLLRLQLLLRLLPTICTNGEPSGRNMRHVLASVILRLLGSRVVHEDAELSFYPLQSFQSKGELESPLEAASADLSGESLFDRLLLVLHGLLSSSRPSWLKPRPASSSKSVNESSKDCAGFDRDLVESLQNDLDRMKLPGTTRLRIQAAMPILLPSVRCFVSCQPPPVPTAAAASLQPSIAISGVLNGNNSQKNPAPLARSANNISTKSKPLPLPLPLQLDNDMEIDPWTLLEDGTGSSLSSSNTSVIGSSDHANLRASSWLKGAVRVRRTDLTYIGAVDDDS
Length1605
PositionKinase
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-0.235
Instability index50.26
Isoelectric point8.39
Molecular weight175980.74
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22933
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.40|      29|     152|     145|     175|       1
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  145-  175 (43.91/31.62)	IAGKdgASPSSFEQWKNTQSRPSAKVKNEMD
  191-  219 (47.49/27.57)	ICST..SSDTGLDESQGSVKRPAESIGSKMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.53|      27|      36|     530|     558|       5
---------------------------------------------------------------------------
  530-  558 (41.66/36.10)	VPS.VLEWEKSFKASCDKRLLSelEIGRSL
  568-  595 (42.87/30.04)	VPAgVEDFDDFFRQKISGSRLS..RVGMSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.54|      14|      29|    1273|    1286|       7
---------------------------------------------------------------------------
 1273- 1286 (24.86/15.66)	KQTGTAS.SGLEGPA
 1304- 1318 (19.68/10.57)	RRTAAAAdSTLPSPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.98|      32|     226|     997|    1028|       8
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  997- 1028 (54.76/36.33)	SVFVQDDGNRA..........SGHGGSKVQHAENEIKLLDKL
 1219- 1260 (46.22/29.41)	SLFQQNVTERAlvelvlpcidQGSDDSRNTFATDLIKQLNNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.47|      19|      33|    1052|    1070|      15
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 1052- 1070 (30.62/20.33)	NEQALIEKLETHDISLADA
 1086- 1104 (31.86/21.46)	NENNFIEIILTRLLVRPDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.87|      18|     220|     438|     479|      18
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  438-  460 (24.32/49.28)	PKVLSnpnSTIHsgRNSMMLPRN
  491-  508 (31.55/ 7.04)	PEVLS...TTMH..RVAALLASN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22933 with Med12 domain of Kingdom Viridiplantae
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