<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22928

Description Uncharacterized protein
SequenceMGLSMTLDVGSCNSLASRESDQAEVEQLQLELQNTIMMYKRACEELVHTQNKVQLLSLECLEEENKVNAALEREETLKRIAAEEKARYLQAIEEVEEAKDLLAKEANGRQIAERNALNESLEKQKIVDAVFSNDRRYKRYTKDEIELATGFFSDSNVIGEGSYGKVYKCNLDHTPVAVKVFCPDAVNKKQEFLREVEVLTQLHHPHLVLLVGACPDNGCLAYEYLENGSLEESIFCRNGKQSLPWFVRFRIVFEVACGLAFLHNSKPDPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDVVPDNMTEYRDSILAGTLNYMDPEYQRTGTVRPKSDLYAFGVTVLQVLTARPPGGLILTVENAIMNGSFTDILDKSVKDWPLAETEELAKIALKCSSLRCRDRPDLDAEVLPVLRRLVDVAAASVEVERGNIYAPSHYFCPILQDLMDDPYIAADGFTYEHRAIKAWLDRHNISPVTKLRFQHSILTPNHTLRSAIQEWRSRVIMQVP
Length509
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.278
Instability index47.69
Isoelectric point5.36
Molecular weight57555.07
Publications
PubMed=16973872

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22928
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.35|      29|      29|      58|      86|       1
---------------------------------------------------------------------------
   58-   86 (44.16/29.56)	LECLEEENKVNAALEREETLKRIAAEEKA
   89-  116 (38.45/24.86)	LQAIEEVEEAKDLLAKEANGRQI.AERNA
  119-  144 (28.74/16.86)	.ESLEKQKIVDAVFSNDRRYKRYTKDE..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.09|      34|      35|     240|     274|       2
---------------------------------------------------------------------------
  240-  274 (57.47/36.87)	KQSLPWFVRfRIVFEVA.CGLA.FLHNSKPDPIV.HRD
  276-  312 (41.62/21.84)	KPGNILLDR.NYVSKIGdVGLAkLISDVVPDNMTeYRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.99|      26|      29|     170|     195|       3
---------------------------------------------------------------------------
  170-  195 (45.73/28.68)	NLDHTPVAVKV.FCPDAVNKKQEFLRE
  201-  227 (44.26/27.55)	QLHHPHLVLLVgACPDNGCLAYEYLEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22928 with Med32 domain of Kingdom Viridiplantae
Unable to open file!