<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22925

Description Uncharacterized protein
SequenceMFRSSVLLATSFFSSLWMNLMLTIKRNGRFLLRSSQNIIMPSVLMDCEEALNQGSITAAEVFISTRSKSILHLFASIGRFLGLEVYENGFSALKVPKNLLTGSTTLLMGFPDYGNSYFLLAQLDKDFKPLFKLLEMQPDSSGKTHSSIDSTHVMRSKKIDVSQMQMLEDELNLSVFDLGKLNHFLQNAADYNQTTEHGLPSEFRLEGHMPIAGCSLLSFSSVVDEVFELEKGASAPSFPLQNVNSSFNASPASHFASVPMNLHSIKARTPSPKWEAGMQVSQVNSMAKVSGVASPYNGSLYPSNNLKGPVHSNSFSSLSSGPGRTTAVKKLSASKSDQDLSSLRSPHSVEVGSNSPMDDDHLRLLNDTSKDAITGIRPSRLSSPSRPTGSRISVSNGKPNGARSSPAGPVRVAGSSPLATTPVSQTAGDTAGFHCFSHDVSIHEKNPRKRTVADMLSLIPALQDLDAKGGFSKRGRTSESAHFQQVSSKMLVSSDMVSKNERYSYGNLIAEANKGNAPSSIYVSALLHVVRHCSLCIKHARLTSQMDELDIPYVEEVGLRNASSNIWFRLPYARGDSWQHICLRLGRPGSMYWDVKINDQHFRDLWELQKGSSSTPWGSGVRIANTSDVDSHIRYDPDGVVLSYQSVESDSIKKLVADIQRLSNARMFALGMRKLLGVKADERQEEISANSDVKVPIGGKNAHEGADKLSELMRRAFRIEAVGLVSLWFSFGSGVLARFVVEWELGKEGCTMHVSPDQLWPHTKFLEDFINGAEVASLLDCIRLTAGPLHALAAATRPARGGPAPGAPGAAAAVASMPKQAGYVQSQGLLPSSLMNNISQPTSGSVGNASITTGPLGNHNPHSAAMLAAAGRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKNFAVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQELNGLDPGFAGGQQTVGLGNSNNPNPSSVSQLSSVNGNRVNLPSSAAISRAANQVAALNRVGNAVPGSSNLAAVSSGLPIRRSPAAGVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVISVKRFHHQQQQQQQQNNTAAQEELTQSEIGEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGLVLAQGGEIAPGQKPRIELCLENHTGLNVDENSENSSAAKSNIHYDRPHNSVDFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYLFGENSNVSFLGMEGSHGGRACWSHADDWEKCKQRVARNVEVNGSSAGEAQGKLKAVADSVQRILQSCLQGLRDGSGVTASSGAT
Length1389
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.07
Grand average of hydropathy-0.172
Instability index43.69
Isoelectric point8.80
Molecular weight149512.91
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22925
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.85|      29|      48|     243|     272|       1
---------------------------------------------------------------------------
  243-  272 (48.06/26.48)	VNSSFNAS..PASHFASvPMNLHSIKARTPSP
  292-  322 (47.79/22.50)	VASPYNGSlyPSNNLKG.PVHSNSFSSLSSGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     159.59|      40|     230|     792|     831|       2
---------------------------------------------------------------------------
  792-  831 (70.49/34.08)	LAAATRPARGGP..APGA..PGAAAAVASMPKQAGYVQSQ..GLLP
  864-  894 (24.67/ 7.22)	AAMLAAAGRGGPgiVPSSllPIDVSVVLRGP...............
  919-  957 (64.43/30.52)	LQPAT.PPKGGP..SVG....GSLPCPQFRPFIMEHVAQElnGLDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     284.90|      91|      97|    1153|    1249|       3
---------------------------------------------------------------------------
 1156- 1249 (138.53/90.78)	QNNTAAQEELTQSEIGEICDyFSRRVASEPYDASRVASFITLLTLP..ISV.LREFL...KLIAWkKGLVLAQGGEIAPGQKPRIELClENHTGLNVDEN
 1251- 1347 (146.37/77.75)	ENSSAAKSNIHYDRPHNSVD.FALTVVLDPAHIPHINAAGGAAWLPycVSVrLRYLFgenSNVSF.LGMEGSHGGRACWSHADDWEKC.KQRVARNVEVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     429.15|     144|     355|     611|     772|       4
---------------------------------------------------------------------------
  611-  765 (216.86/184.26)	GSSSTPWGSGVriANTSDVDSHiRYD.PDGVVLSYQSVESDSIKKLVADIQRLSNARMFALGM..RK..LLGVKADERQEeisANSDVkVPIGGKNAHEGADKLSELMRRAFR..IEAVGLvsLW.FSFGSGVLARFVVEWELGKEGCTMHVspDQLWPHTKF
  969- 1120 (212.28/144.89)	GNSNNPNPSSV..SQLSSVNGN.RVNlPSSAAISRAANQVAALNRVGNAVPGSSNLAAVSSGLpiRRspAAGVPAHVRGE...LNTAI.IGLGDDGGYGGGWVPLVALKKVLRgiLKYLGV..LWlFAQLPDLLKEILGSILKDNEGALLNL..DQEQPALRF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     238.63|      81|      97|     360|     448|       5
---------------------------------------------------------------------------
  360-  448 (122.62/89.62)	DHLRLLNDTSK.DAITGIRPSRLSSPS...RPTGSRISVSNGK.PNGARSSPAGPVRVA..GSSPlATTPVSqtAgdtaGFHCFSHdVSIHEKNPR
  454-  541 (116.01/64.60)	DMLSLIPALQDlDAKGGFSKRGRTSESahfQQVSSKMLVSSDMvSKNERYSYGNLIAEAnkGNAP.SSIYVS..A....LLHVVRH.CSLCIKHAR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22925 with Med14 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VHSNSFSSLSSGPGRTTAVKKLSASKSDQDLSSLRSPHSVEVGSNSPMDDDHLRLLNDTSKDAITGIRPSRLSSPSRPTGSRISVSNGKPNGARSSPAGPVRVAGSSPLATTPVS
310
424










Molecular Recognition Features






MoRF SequenceStartStop




NANANA