<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22916

Description Uncharacterized protein
SequenceMLSMEIRSQNAMPAAPMDPEASHSMPPQVQNQGLFLPLLSSTDQSQARQQLVSQNMQSIPGVSQNSVGNSMGQGIPSTMFANSQRQMPASLDSTAQTGHANGADWQEQIYQKHDSHPQQPKSEQLEKLEVFKAMLERLITFLQVSKNNITPSFKEKLGSNEKHIVSFLNPSRFRKPIPNLQLGQLPQPHVQPMQQSQSPVPQLQSHENQLNTQLPSMNVQGSIPTMQQNNMSSLQHGSLSSLSGVSMSQPIMMMWDERF
Length259
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.04
Grand average of hydropathy-0.650
Instability index63.85
Isoelectric point6.71
Molecular weight28824.30
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22916
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.66|      19|      20|     197|     216|       2
---------------------------------------------------------------------------
  197-  216 (29.95/16.66)	QSPVPQLQsHENQLNTQLPS
  220-  238 (34.71/15.83)	QGSIPTMQ.QNNMSSLQHGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.86|      16|      20|      81|      96|       3
---------------------------------------------------------------------------
   81-   96 (27.71/13.47)	ANSQRQMPASLDSTAQ
  103-  118 (32.15/16.56)	ADWQEQIYQKHDSHPQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22916 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLSMEIRSQNAMPAAPMDPEASHSMPPQVQNQGLFLPLLSSTDQSQARQQLVSQNMQSIPGVSQNSVGNSMGQGIPSTMFANSQRQMPASLDSTAQTGHANGADWQEQIYQKHDSHPQQPKSEQLEK
2) PIPNLQLGQLPQPHVQPMQQSQSPVPQLQSHENQLNTQLPSMNVQGSIPTMQQNNMSSLQHGSLSSL
1
176
127
242










Molecular Recognition Features






MoRF SequenceStartStop




NANANA