<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22912

Description Uncharacterized protein
SequenceMRADASTDWKEFKSPDGRKYYYNKVTKQSKWEIPEELKLARARVENTSTMEKQSEVFTNSHASTSVPPSADKTPSIVDASTAQGAPSSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVADVPKSAEVTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAGKEVVIDEKVNNVPLEEKAVNHEPLLYADKLEAKNLFKALLESANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKAREEFKNMLEESKELTASIRLSKAVTLFENDERFKAVERERDRKDLIETYLQELEEKERAKAQEQRKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRIEIFQDYLHDLEKEEEEQRKIHKEELRKAERKNRDEFRKLLEEHVAAGTLTAKTNWRDYHLKVKDLPAYVAVASNNSGSTPKDLFEDVAEELQKQYHEDKTRIKDVVKLKKVPLASTWTLEDLKVAIIEDVGSPHISDVNLKMVFDELLERAREKEEKEARKRKRLEDDFLILLQSIKDITASSKWESCKEIFDGSREYSSIGEEGFCREIFEEYVSQLKDQEKENEWKRKEEKAKKEKEREEREKRKAKHRREKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRETR
Length761
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-1.186
Instability index54.34
Isoelectric point5.84
Molecular weight88468.34
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22912
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.92|      15|      16|     620|     634|       1
---------------------------------------------------------------------------
  620-  634 (21.65/ 8.51)	KAKKEKER.EEREKRK
  636-  651 (19.27/ 6.64)	KHRREKERgHDRETRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.85|      16|      16|     676|     691|       2
---------------------------------------------------------------------------
  676-  691 (27.25/14.32)	DNSRKQRKR..HQNAVDD
  693-  710 (20.60/ 8.99)	DESEKDRSKssHRHSSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.67|      10|      16|     575|     587|       3
---------------------------------------------------------------------------
  575-  587 (15.81/18.25)	CKEIFDgsrEYSS
  594-  603 (20.86/12.65)	CREIFE...EYVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     355.50|      64|      65|     280|     343|       4
---------------------------------------------------------------------------
  214-  275 (75.79/39.83)	.FKALL.E...SANVGSEWTWDQ...AMRVIIN..DKRYG........ALK.......TLG...ERKQAFNEF...LGQKRKQEAEERRikqK
  280-  343 (98.27/53.85)	EFKNMLEE...SKELTASIRLSK...AVTLFEN..DERFK........AVE.......RER...DRKDLIETYLQELEEKERAKAQEQR...K
  348-  406 (90.94/49.28)	EYRQFLES...CEFIKASTQWRK...VQDRLEA..DERCS........RLE.......K.I...DRIEIFQDYLHDLEKEE....EEQR...K
  422-  478 (27.90/ 9.97)	EFRKLLEEhvaAGTLTAK.............TNwrDYHLKvkdlpayvAVA.......SNNsgsTPKDLFEDVAEEL................
  480-  550 (62.60/31.61)	..KQYHED...KTRIKDVVKLKKvplASTWTLE..DLKVA........IIEdvgsphiSDV...NLKMVFDELLERAREKEEKEAR.KR...K
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.73|      18|      18|     112|     129|       5
---------------------------------------------------------------------------
  112-  129 (30.98/24.64)	LPV..MSSSMTTNADEVQTI
  131-  150 (24.74/18.15)	IPVadVPKSAEVTATAVNTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.54|      18|      18|      15|      32|       6
---------------------------------------------------------------------------
   15-   32 (33.63/23.02)	PDGRKYYYNKVTKQSKWE
   34-   51 (28.91/18.73)	PEELKLARARVENTSTME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.48|      20|      23|     715|     737|       7
---------------------------------------------------------------------------
  715-  734 (35.33/23.22)	RRHASTPE.SDSESRHKRHKR
  741-  761 (30.15/10.78)	RRTGDLEDlEDGEFGEDRETR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22912 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKENEWKRKEEKAKKEKEREEREKRKAKHRREKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRETR
2) IPEELKLARARVENTSTMEKQSEVFTNSHASTSVPPSADKTPSIVDASTAQGA
3) SSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVAD
4) VTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAGKEVVIDE
609
33
87
142
761
85
135
185










Molecular Recognition Features






MoRF SequenceStartStop




1) ADASTDWKEFKSPDGRKYYYNKVTKQSKWEIPEELKLAR
2) EDLEDGEFGE
3
747
41
756