<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22911

Description Uncharacterized protein
SequenceMDANNWRPTAPGGEPVMDTGDWRTQLQPDARQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLAMENKSQSTIPNSLPPNSTGSGNKPLDPGGSHSMQSQVHNQGPSLTIPLPANQSQERQQLLSQNMQTGMASSGVQSSSGLTSALPPISSLTQTVPNSVGQNPNMQSISGVSQNPVGNPMGQGVPSNMLANSQRQGRQLVVPQQQQQPQNPQQYFYQQQLQQQLLKQKLQQGNPQHSLVQSHVQQQQQQQQNLLQSNQLQSSQQSGVQTPSVMQPSIMQTAPLSCLQQNQPSSVQQSTQPMLQQHPQPVLRQQQQPQQTAGIHQQQRLLGQQNNLPNLQQQQLMVQQNNLSSMHQQQLGSQSNVSSLQQQQLLGAQSGNSSMQTNQHPVHMLQQSKVTLQQQAQQSAGTLLPNQGQQSQPQLPQQQLMSQIQSQPVQLQQQSNPLQHDLQQRFQASGSLLQQQNVTDQQKQLYQSQRALPETSPTSLDSTTQTGHVNVNDWQEEIYQKIKVMKEMYFPEINEIYQRIAAKLPQHDSHPQQPKSEQLDKLKALKTMLERLIMFLQVPKNNIKLNFKEKLGYYENQILNFLNTSRPRKPVPNLQQGQLPQLHMQPMQRPQSQVPQLQSHENQLNPQLQSMNLQGSVPTMQQNNVPSLPHNSLSSLSGVSTSQPNKMNPMQSASNLDSGQGNSLSSLQQAPVGSVQQNPVSSSQPTNFNTLSTQSGVSMLQSNIPLQLNSNMIQQQHLKQQMLQTQQLKQQFQQRQPQQQQRQTQQQQHLMQKQQMLLQQQQQQLHQQAKQQLPAQMQTQQIPQPHQMNDVNEMKLRQGIGIKPAVFQQHLSTGQRTAFPHQQMKPGSSFPISSPQMLQHASPQLQQHSSPQIDQQNLLPSLTKTGTPLQSANSPFVVPSPSTPLAPSPVPGDSEKPISGISSNIVHQPTVAQATAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVMEQPLERMIKAVKSLSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFFTQDGMTGSKKMRRHTSAMPLNVASSAGSVSDSFKQFTGPETSDLESTVTSSVKRPKIEANHALLEEIREINQRLLDTVVDISDEDVDSTAAAAAAEGGGGTFVKCSFIAVALSPNLKAQYTSAQMSTIQPLRLLVPTNYPNCSPILLDKFPFEVSKEYEDLSIKAKFRFSISLRSLSQPMSLGDIARTWDVCAHAVISEHAQQSGGGTFSSKYGSWENCVSAA
Length1299
PositionTail
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.03
Grand average of hydropathy-0.706
Instability index70.68
Isoelectric point9.44
Molecular weight143032.14
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22911
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.17|      31|      31|     349|     379|       1
---------------------------------------------------------------------------
  357-  385 (55.84/14.38)	QQNNL.PNLQQQQLMVQQNNLSSMHQQQ..LG
  442-  465 (39.90/ 7.74)	QQSQ..PQLPQQQLMSQ......IQSQPVQLQ
  777-  805 (39.44/ 7.55)	QTQQLkQQFQQRQP..QQQQRQT.QQQQHLMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     718.79|     105|     105|     142|     246|       5
---------------------------------------------------------------------------
   11-   84 (58.66/11.79)	.............................................PGG....EPvMDTGDWRTQL.....QPDARQRI...VNKimetlKRHLP.........FSGQ........................EGL...QELKKIavrFEEKIYTA.AT.S................................................QSD.....YLR.KI.SL
   85-  177 (122.77/34.24)	KMlamenksqsTIPNSL....PPN.......S...........TGSGN....KP.LDPGGSHSMQSQV..HNQGPSLT...IP.....................LPA........................NQS...QERQQL...LSQNMQTGMAS.SGV..............Q...............................SSSGLT.SALP.PISSL
  178-  264 (160.17/47.34)	TQ.........TVPNSVG..QNPNMQSISGVS...........QNPVG....NP.MGQGVPSNMLANS..QRQGRQLV...VPQ.....QQQQP.QN...PQQYFYQ........................QQL...Q..QQL...LKQKLQQG.......................................................N.........PQHSL
  317-  393 (48.14/ 8.11)	.............PSSVQ..QS.........T...........Q.........P.MLQQHPQPVL..................R.....QQQQP.QQ...TAGIHQQ........................QRL..........................................lgqqnnlpnlqqqqlmvqqnnlssmhqqqlgSQSNV.........SSL
  395-  516 (79.69/19.16)	QQ.........QLLGAQS..GNSSMQT....N...........QHPV..........H.....MLQQS.......KVT...LQQ.....QAQQS.AGtllPNQ...GqqsqpqlpqqqlmsqiqsqpvqlqQQS...NPLQHD...LQQRFQ...AS.GSLlqqqnvtdqqkqlyQ...............................SQRALP.ETSPtSLDST
  517-  588 (73.97/17.15)	TQ.........TGHVNVNdwQEEIYQKI.................KVM....KE.M..YFP.EI..NEiyQRIAAKL.....PQ.....HDSHP.QQ...PK.......................................................sEQL..............D...............................KLKALK.TMLE.RLIMF
  589-  692 (123.49/34.49)	LQ.........VPKNNI....KLNFKEKLGYY...........ENQIL....NF.LNTSRPRKPVPNL..Q.QG.QL.....PQ.....LHMQPmQR...PQSQVPQ........................LQShenQLNPQL...QSMNLQGSVPT.MQQ..............N...............................NVPSLPhNSLS.SLSGV
  693-  776 (51.90/ 9.42)	ST.........SQPNKM....NP.MQSASNLDsgqgnslsslqQAPVGsvqqNP.VSSSQPTNFNTLS..TQSGVSMLqsnIPL.....QLNSN.MI...QQQHLKQ........................QML..........................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.00|      44|     104|    1133|    1178|       6
---------------------------------------------------------------------------
 1133- 1178 (67.75/55.23)	IEANHALLEEIREINQRLldTVVDISDE.DVDSTA..AAAAAEGGGGTF
 1239- 1285 (68.24/48.72)	IKAKFRFSISLRSLSQPM..SLGDIARTwDVCAHAviSEHAQQSGGGTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.05|      48|      48|     826|     873|       7
---------------------------------------------------------------------------
  826-  873 (86.35/41.77)	LPAQMQ...TQQIPQPHQMNDVNEMKLRQGIGIKPAVFQQH.LSTGQRTAFP
  876-  921 (57.51/24.71)	...QMKpgsSFPISSP.QMLQHASPQLQQHSS..PQIDQQNlLPSLTKTGTP
  931-  970 (66.19/29.84)	VPSP.S...TPLAPSPVPGD..SEKPIS...GISSNIVHQP..TVAQATA.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.18|      53|      84|     987|    1044|       9
---------------------------------------------------------------------------
  987- 1044 (75.76/55.67)	EFTSPDGAHGGalTTVSGKSNVMeqPLERMIKA..VkSLSPKALSA.SVSDI.GSVVSMIDR
 1074- 1130 (77.42/42.61)	NFFTQDGMTGS..KKMRRHTSAM..PLNVASSAgsV.SDSFKQFTGpETSDLeSTVTSSVKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22911 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDANNWRPTAPGGEPVMDTGDWRTQLQPDARQRIVNKIMETL
2) MENKSQSTIPNSLPPNSTGSGNKPLDPGGSHSMQSQVHNQGPSLTIPLPANQSQERQQLLSQNMQTGMASSGVQSSSGLTSALPPISSLTQTVPNSVGQNPNMQSISGVSQNPVGNPMGQGVPSNMLANSQRQGRQLVVPQQQQQP
3) QQQNLLQSNQLQSSQQSGVQTPSVMQPSIMQTAPLSCLQQNQPSSVQQSTQPMLQQHPQPVLRQQQQPQQTAGIHQQQRLLGQQNNLPNLQQQQLMVQQNNLSSMHQQQLGSQSNVSSLQQQQLLGAQSGNSSMQTNQHPVHMLQQSKVTLQQQAQQSAGTLLPNQGQQSQPQLPQQQLMSQIQSQPVQLQQQSNPLQHDLQQRFQASGSLLQ
4) TSRPRKPVPNLQQGQLPQLHMQPMQRPQSQVPQLQSHENQLNPQLQSMNLQGSVPTMQQNNVPSLPHNSLSSLSGVSTSQPNKMNPMQSASNLDSGQGNSLSSLQQAPVGSVQQNPVSSSQPTNFNTLSTQSGVSMLQSNIPLQLNSNMIQQQHLKQQMLQTQQLKQQFQQRQPQQQQRQTQQQQHLMQKQQMLLQQQQQQLHQQAKQQLPAQMQTQQIPQPHQMNDVNEMKLRQGIGIKPAVFQQHLSTGQRTAFPHQQMKPGSSFPISSPQMLQHASPQLQQHSSPQIDQQNLLPSLTKTGTPLQSANSPFVVPSPSTPLAPSPVPGDSEKPISGISSNIVH
1
89
275
617
42
234
487
960










Molecular Recognition Features






MoRF SequenceStartStop




NANANA