<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22910

Description Uncharacterized protein
SequenceMANNPQFSGMQPLQPPLVGPMDHPQNFAPPPPMPIQFRPVGPVQPSQQFIPVSSPHFQPVGRGVTVMNPGLPPQPPQPQFPHPMQQLPARPNQPSLGPPPPQAIPLPNAQPNRHVMSGSPLPPPSVQTPNSYMPGLGGPGVPLSSSYTFAPSSYGQPPVTFNAVTQFQPMPQMHVQPIPTGGHPASSMNHNTAPVTPIQRNGEQSSVTTTNATSIQPKPTEEALTEWKEHTSANGRRFYYNKRTRQSSWEKPYELLTPIERADASTDWKEFKSPDGRKYYYNKVTKQSKWEIPEELKLARARVENTSTMEKQSEVFTNSHASTSVPPSADKTPSIVDASTAQGAPSSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVADVPKSAEVTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAGKEVVIDEKVNNVPLEEKAVNHEPLLYADKLEAKNLFKALLESANVGSEWTWDQAMRVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKAREEFKNMLEESKELTASIRLSKAVTLFENDERFKAVERERDRKDLIETYLQELEEKERAKAQEQRKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRIEIFQDYLHDLEKEEEEQRKIHKEELRKAERKNRDEFRKLLEEHVAAGTLTAKTNWRDYHLKVKDLPAYVAVASNNSGSTPKDLFEDVAEELQKQYHEDKTRIKDVVKLKKVPLASTWTLEDLKVAIIEDVGSPHISDVNLKMVFDELLERAREKEEKEARKRKRLEDDFLILLQSIKDITASSKWESCKEIFDGSREYSSIGEEGFCREIFEEYVSQLKDQEKENEWKRKEEKAKKEKEREEREKRKAKHRREKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRETR
Length1020
PositionUnknown
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Salicaceae> Saliceae> Populus.
Aromaticity0.06
Grand average of hydropathy-1.070
Instability index60.65
Isoelectric point6.24
Molecular weight116567.80
Publications
PubMed=16973872

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22910
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     167.02|      20|      20|      88|     107|       1
---------------------------------------------------------------------------
   17-   38 (25.84/ 9.75)	LVGPmDHPqN.....FAPPP......PMP.IQFR
   39-   63 (25.79/ 9.71)	PVGP.VQP.SqqfipVSSPH......FQP.VGRG
   64-   83 (30.82/13.13)	VTVM.N.P.G.....LPPQP......PQPqFPHP
   88-  107 (42.54/21.11)	PARP.NQP.S.....LGPPP......PQA.IPLP
  111-  127 (20.87/ 6.37)	PNR..HVM.S.....GSPLP......PPS.VQ..
  151-  171 (21.15/ 6.56)	PS.......S.....YGQPPvtfnavTQF.QPMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     176.68|      22|      23|     558|     579|       2
---------------------------------------------------------------------------
  476-  492 (17.80/ 7.34)	.LL....ESA.N.....VGSEWTWDQAM
  493-  514 (25.50/14.15)	RVI....IND.KR.YGALKTLGERKQAF
  515-  537 (21.45/10.56)	NEF....LGQ.KRkQEAEERRIKQKKAR
  538-  560 (19.28/ 8.65)	EEF....KNMlEE.SKELTASIRLSKAV
  561-  582 (31.95/19.84)	TLF....END.ER.FKAVERERDRKDLI
  583-  605 (18.70/ 8.13)	ETYlqelEEK.ER.AKA..QEQ.RKRNI
  610-  628 (24.67/13.41)	QFL....ESC.EF.IKA...STQWRKVQ
  629-  645 (17.33/ 6.92)	DRL....EAD.ER.CSRLEK.IDR....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.41|      16|      16|     935|     950|       4
---------------------------------------------------------------------------
  935-  950 (25.98/12.25)	DNSRKQRKR..HQNAVDD
  952-  969 (18.43/ 6.57)	DESEKDRSKssHRHSSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.67|      10|      16|     834|     846|       5
---------------------------------------------------------------------------
  834-  846 (15.81/14.98)	CKEIFDgsrEYSS
  853-  862 (20.86/10.36)	CREIFE...EYVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.66|      35|      39|     222|     256|       6
---------------------------------------------------------------------------
  222-  256 (66.99/49.30)	EALTEWKEHTSANGRR..FYYNKRTRQS...SWEKPYELL
  263-  297 (65.20/47.74)	DASTDWKEFKSPDGRK..YYYNKVTKQS...KWEIPEELK
  298-  331 (26.47/14.01)	LARARV.ENTSTMEKQseVFTNSHASTSvppSADK.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.96|      33|      37|     391|     427|       7
---------------------------------------------------------------------------
  338-  370 (44.64/18.13)	ASTAQGAPSSPVLVIPVAAAGNSQSQLASESST
  393-  425 (52.33/37.18)	ADVPKSAEVTATAVNTITAPMNNFSDQDKPSSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.75|      13|      32|     865|     878|       9
---------------------------------------------------------------------------
  865-  878 (17.61/14.51)	KDQEKENEwKRKEE
  900-  912 (23.14/12.22)	KERGHDRE.TRKEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.12|      23|      61|     728|     750|      11
---------------------------------------------------------------------------
  685-  710 (27.63/14.02)	LLEEHVAAgtlTAKTNWRDYHLKVKD
  728-  750 (37.29/21.40)	DLFEDVAE...ELQKQYHEDKTRIKD
  810-  824 (21.21/ 9.12)	RLEDDFLI...LLQS........IKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.66|      15|      18|     971|     985|      12
---------------------------------------------------------------------------
  971-  985 (25.54/15.58)	KKSRRHASTPESDSE
  992- 1006 (26.12/16.13)	KRDHRNSSRRTGDLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22910 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKENEWKRKEEKAKKEKEREEREKRKAKHRREKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNSSRRTGDLEDLEDGEFGEDRETR
2) IPEELKLARARVENTSTMEKQSEVFTNSHASTSVPPSADKTPSIVDASTAQG
3) MANNPQFSGMQPLQPPLVGPMDHPQNFAPPPPMPIQFRPVGPVQPSQQFIPVSSPHFQPVGRGVTVMNPGLPPQPPQPQFPHPMQQLPARPNQPSLGPPPPQAIPLPNAQPNRHVMSGSPLPPPSVQTPNSYMPGLGGPGVPLSSSYTFAPSSYGQPPVTFNAVTQFQPMPQMHVQPIPTGGHPASSMNHNTAPVTPIQRNGEQSSVTTTNATSIQPKPTEEALTEWKEHTS
4) SSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVAD
5) VTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAGKEVVIDE
868
292
1
346
401
1020
343
232
394
444










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNKVTK
276
286