<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22902

Description Uncharacterized protein (Fragment)
SequenceIYLEFFILKQKMNNQINSPAGYYQQGSMHPGQPPQQVMVQSQSIPPQNPIATSNMMPGQSNDQFYPDPEIKNDGLIDPIQKSKDMMNQLKNSLQALMGQLVIALNPPSETNPFQTENHYQLLGKQIENFNRACDLLTVNLKVACESQEISNELKNFSRYYAHISQIDANRLENPFINSINIHMQRIGEFQNLILQYLAPKNLNQTEN
Length207
PositionTail
OrganismBrachionus plicatilis (Marine rotifer) (Brachionus muelleri)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Gnathifera> Rotifera> Eurotatoria> Monogononta> Pseudotrocha> Ploima> Brachionidae> Brachionus.
Aromaticity0.08
Grand average of hydropathy-0.613
Instability index63.52
Isoelectric point5.53
Molecular weight23681.57
Publications
PubMed=30375419

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22902
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.80|      10|      61|      45|      54|       1
---------------------------------------------------------------------------
   45-   54 (20.91/ 9.82)	PPQ..NPIATSN
  106-  117 (16.89/ 6.74)	PPSetNPFQTEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.71|      12|      24|     120|     131|       4
---------------------------------------------------------------------------
  120-  131 (20.63/12.67)	QLLGKQIENFNR
  147-  158 (20.08/12.16)	QEISNELKNFSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22902 with Med29 domain of Kingdom Metazoa
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