<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22891

Description Uncharacterized protein (Fragment)
SequenceIFKMVVNTEILLRAWRGRWTPLQWLVEVKKLAGKDNEELQDLAECLVQQATFGSTPSTLILSYLNHGISTKVISCSSALTAVHQFQNIIKHKCLSALLDLLLGFIPIISGPDSDEECLQLAVSFIKILYWLLIVSTRLLKLCIESIRLSGGINLLFHLANIGKCHRAFGQLIGSSSYRAMVIVGKMEEQATALELDRQLQAHLKDLLMTQPDGVVPEVQLYIKELMVNFSRLQSLNSSSGSGDISPGHVPNMPIQIITQFQVLVSPFYTPHQVADVMESTMHTQNVARHQLYLEFLRSALVGLLGAPEKSMEMILWTGFLFLKVPIVIHLLESRSQPPVQLQPSPVEHSAAHTAFQQLLQFAPLLDDADQKCKCNCYKELIQQYCKDLNQQMVDRIGQLVSQRMLSNEAQDLLSIQVSYNHPAQQIQDEESKIMEIIMALESDLSSRDEKFLNPLLNVEKFRWMTVAAASVGKLPSLINGLVRVTEQTLRPATEKEDVKKGSIRGELFNTSFLLLCHIGQVYGSKVISEVSKNRLPTPFVVQWILRHIPGIDKWRSFIPDTQHTPNQAAVNELLNMFFSNSAFPASQANWDEHCTNVSSALHDVLKASQWESKAVPPDHLQKLCELLKYEAPALAVCACSWSCGHIHTLTAEERKHPMRLVGFLVKPVNPRGFSQGFVDRCAMLCEVMKTMSSSVEGKDNTWEIDNPISKGKPVSKTLASLFSSVVKARQLSSKTLEQFRHLLITGGNEWFIYSIVQEVLKCNRHEDILLAADLASCLLTFDSESLVPCFLEKVMPMVMNHTEAETILEDPKGWAIARLMAHAVCLGMTIEHTLSKGDLTDSEIERPAKIQRLDSFPSLFNSTSSSRVQQTLVRFCEDFIATVKTTEVGPVPALLVSFLQQAVASIGTIVGPLSACLPEDLVKEILELSPSLQNTPDVLLGLCNMKTTEGRQLCAKALCNSI
Length962
PositionTail
OrganismPocillopora damicornis
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Scleractinia> Astrocoeniina> Pocilloporidae> Pocillopora.
Aromaticity0.07
Grand average of hydropathy0.046
Instability index47.15
Isoelectric point6.19
Molecular weight107249.34
Publications
PubMed=30382153

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22891
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.49|      21|     349|      34|      66|       1
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   41-   66 (28.33/44.40)	DLAECLVqqaTFGStpSTLILSYLNH
  773-  793 (39.16/20.24)	DLASCLL...TFDS..ESLVPCFLEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.67|      28|     349|     144|     174|       2
---------------------------------------------------------------------------
  144-  174 (42.31/34.90)	ESIRlSGGI.NLLFHLANIGKCHraFGQLIGS
  496-  524 (46.37/27.49)	EDVK.KGSIrGELFNTSFLLLCH..IGQVYGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.07|      53|     355|     200|     252|       8
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  200-  252 (91.83/56.72)	QAHLKDLL.MTQPDGVVPEVQLYIKELMVNFSR.LQSLNSSS..GSGDISPGHVPNM
  567-  623 (78.24/47.29)	QAAVNELLnMFFSNSAFPASQANWDEHCTNVSSaLHDVLKASqwESKAVPPDHLQKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22891 with Med24 domain of Kingdom Metazoa
Unable to open file!