<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22888

Description Uncharacterized protein
SequenceMKHVGGMGLHQEMESISQLCGHAQQRQIQSANYPEDLFIDKNVLKVTHIEQEETLSFNPSSLWYSPQITRNGEKAQADNREVKMKGPEPVISQIIDKLKHINQGFVDSPNLFGQALEQLLSQFSPREGTKILQYIDDLLIAGQEEGNVKACTISLLNFLGEKGLNVSKSKLQFAEPEKKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKRRRGEGEGEGEGEGEGDNAPDSPSCPHSLQC
Length248
PositionHead
OrganismHirundo rustica rustica
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Passeriformes> Sylvioidea> Hirundinidae> Hirundo.
Aromaticity0.04
Grand average of hydropathy-1.152
Instability index53.34
Isoelectric point5.42
Molecular weight28188.30
Publications









Function






Annotated function


GO - Cellular Component
anchored component of plasma membrane	GO:0046658	IEA:InterPro
collagen-containing extracellular matrix	GO:0062023	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of signal transduction	GO:0009966	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22888
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.72|      15|      15|     180|     194|       1
---------------------------------------------------------------------------
  180-  194 (28.37/ 9.87)	EKEKEKEKEKEKEKE
  196-  210 (28.37/ 9.87)	EKEKEKEKEKEKEKE
  212-  226 (25.98/ 8.59)	EKEKEKRRRGEGEGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.86|      28|      51|      22|      51|       2
---------------------------------------------------------------------------
   22-   51 (38.68/32.43)	HAQQRQIQSANyPEDLfIDKNVLKVTHIEQ
   76-  103 (48.17/29.34)	QADNREVKMKG.PEPV.ISQIIDKLKHINQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22888 with Med19 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SKLQFAEPEKKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKRRRGEGEGEGEGEGEGDNAPDSPSCPHSLQC
169
248










Molecular Recognition Features






MoRF SequenceStartStop




1) KEKEKEKEKEKEKRRRGEGEGEGEGE
205
230