<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22886

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKRFFPRGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSTVLTAISKFDDFSRDLCVQSLLEIMDMFCDRLSCHGKAEECISLCRALLSALTWFLRCATFYAEKVKEPLEQAAAENQLKMCLERLEKVLSSTKNRALIHIAKLEEASSWSTVEQSLVKLGENLNNLGSSPLRSQADDCVSLIKSIPTMLSVHSEQLNKTGFPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQRIPSPLFVLEIWKACFVGLIECPEGTEELKWTAFTFLKMPQVLVKLKKYPQGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCNCMSLLLQECSKQGLLSEANMNNLIDKRAADKENSPSLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFVKLNEFTKQITGEISKSGPVRALLFDISFLMLCHVAQTYGSEVILLDSNPPGEVPFFETWMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEVCLSISAAILEILNAWENGVLTFESIQKITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLATPLYGENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTIPYWNLLPPKKPIKEVLTGVFTKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLVKELLKETRKEHTLRAVELLYAIFCLDMQQLTLTLLGHILPNLLTDSSKWHTLMDPPGKALAKLSVWCALSSYSSHSKVQASARQKKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEDSNILSSPNRSMSSSLSASQLHTVSMRDPLNRVLANLFLLISSILGAKTAGTHTQFVQWFMEECVECLEQGSRGSILQFMPFTMVSELVKVSTMSSPKIVLAITDLSLPLGRRVAAKAIAAL
Length986
PositionTail
OrganismHirundo rustica rustica
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Passeriformes> Sylvioidea> Hirundinidae> Hirundo.
Aromaticity0.07
Grand average of hydropathy0.015
Instability index48.37
Isoelectric point6.72
Molecular weight110418.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22886
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.64|      14|      38|     377|     390|       1
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  377-  390 (23.76/15.59)	NLIDKRAADKENSP
  416-  429 (24.88/16.67)	NILKTMDADHSKSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.02|      30|     285|      17|      48|       2
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   17-   48 (49.80/41.12)	RWSDY......QWAINMKRfFPRGA...TWDIlNLA.EALLE
  301-  340 (39.23/23.25)	KWTAFtflkmpQVLVKLKK.YPQGDkdfTEDV.NCAfEFLLK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     237.41|      74|     285|     445|     569|       3
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   84-  166 (117.72/51.61)	KFDDFSRDLCvqSLLEIMDMFCDRLSCHGKAeecislcRALLSALTWFLRC..ATFYAEKV.....KEPLEQAAAENQLKMCLERLEKVL
  457-  537 (119.70/111.87)	KLKSFARKFV..KLNEFTKQITGEISKSGPV.......RALLFDISFLMLChvAQTYGSEVilldsNPPGEVPFFETWMLTCMPEEGKIL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     392.89|     100|     301|     540|     639|       4
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  540-  639 (161.60/105.52)	DHPCFRP.DSTKVESLVALL.NNSSEMKLVQMKWHEVCLSISAAILEILNAWE..NGVLTFESI.QKITDNIKGK.VCSMAV.CAVAWLVAH.VRMLGLDEREKSLQ.M
  746-  836 (104.07/65.12)	............VKELLKET.RKEHTLRAVELLYAIFCLDMQQLTLTLLGHIL..PNLLTDSSKwHTLMDP.PGKaLAKLSVwCALSSYSSH.SKVQASARQKKRHR.E
  840-  944 (127.22/81.37)	DYISLFPlDDTQPSKLMRLLsSNEEDSNILSSPNRSMSSSLSASQLHTVSMRDplNRVLA.NLF.LLISSILGAK.TAGTHT.QFVQWFMEEcVECLEQGSRGSILQfM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22886 with Med24 domain of Kingdom Metazoa
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