<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22881

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKRFFPRGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSTVLMAISKFDDFSRDLCVQSLLEIMDMFCDRLSCHGKAEECISLCRALLSALTWLLRCATFYAEKVKEPLEQAAAENQLKMCLERLEKMLSSTKNRALIHIAKLEETSSWSTVEQSLVKLGENLNNLGSSPLRSQADDCVSLIKSIPTMLSVHSEQLNKTGFPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQRIPSPLFVLEIWKACFVGLIECPEGTEELKWTAFTFLKMPQVLVKLKKYPQGDKDFTEDVNSAFEFLLKLTPLLDKADQRCNCNCMSLLLQECSKQGLLSEANMNNLIDKRAADKENSPALKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFVKLNEFTKQITGEISKSGPVRALLFDISFLMLCHVAQTYGSEVILSDSNPPGEVPFFETWMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEVCLSISAAILEILNAWENGVLTFESIQKITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLATPLYGENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTIPYWNLLPPKKPIKEVLTSVFTKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLVKELLKETRKEHTLRAVELLYAIFCLDMQQLTLTLLGHILPNLLTDSSKWHTLMDPPGKALAKLSVWCALSSYSSHSKVQASARQKKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEDSNILSSPNRSMSSSLSASQLHTVSMRDPLNRVLANLFLLISSILGAKTAGTHTQFVQWFMEECVECLEQGSRGSILQFMPFTMVSELVKVSTMSSPKIVLAITDLSLPLGRRVAAKAIAAL
Length986
PositionTail
OrganismChloebia gouldiae (Gouldian finch) (Erythrura gouldiae)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Passeriformes> Passeroidea> Estrildidae> Erythrura.
Aromaticity0.07
Grand average of hydropathy0.008
Instability index49.15
Isoelectric point6.72
Molecular weight110448.79
Publications
PubMed=30282656

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:Ensembl

GO - Biological Function
GO - Biological Process
stem cell population maintenance	GO:0019827	IEA:Ensembl
transcription by RNA polymerase II	GO:0006366	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22881
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     885.27|     274|     300|     342|     640|       1
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   55-  224 (133.63/72.15)	.....................................................................................................S...PNPLiLSYLKYAISSQmvSYSTVLMAIS...KFDDFSRDLCvqS..LLEIMDMFCDRLSCHGKAeecislcRALL.SALTWLLRC..ATFYAEKV............KEPLE.QAAAENQ.LKMCLERLEKMLSS............TknraliHIAKLE.ETSSwstVEqSLVKLGE.NLNNLGSSPLRsQADDCVSLIKSIPT............................................................
  342-  640 (421.54/314.11)	TPLLDKadqrcncNCMSLLlqecskqgllseaN.....MNNLIDKRAAD.........KENSPALKSAENANIQPNPGLILRAEPTV.TNILKTMDADhSKS...PEGL.LGVLGHMLSGK..SLDLLLAAAAatGKLKSFARKFV..K..LNEFTKQITGEISKSGPV.......RALL.FDISFLMLCHVAQTYGSEVILSDS.......NPPGE.VPFFETW.MLTCMPEEGKILNP............D......HPCFRP.DSTK...VE.SLVALLN.NSSEMKLVQMK.WHEVCLSISAAILEILNAWE..NGVLTfeSIQKITDNIKG.KVCSMAVCAVAWLVAH.VRMLGLDEREKSLQMI
  645-  944 (330.10/204.95)	TPLYGE.......NTLQFY.............NervviMSSILEHMCADvlqqtatqiKFPSTGMDTIPYWNLLPPKKPIKEVLTSVfTKVLEKGWVD.SRSihiFDTL.L....HM..................GGVYWFCNNLV..KelLKETRKEHT..LRAVELL.......YAIFcLDMQQLTLTLLGHILPN..LLTDSskwhtlmDPPGKaLAKLSVWcALSSYSSHSKVQASarqkkrhredieD......YISLFPlDDTQ...PS.KLMRLLSsNEEDSNILSSP.NRSMSSSLSASQLHTVSMRDplNRVLA..NLFLLISSILGaKTAGTHTQFVQWFMEEcVECLEQGSRGSILQFM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.83|      31|     287|      17|      48|       2
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   17-   48 (54.05/46.25)	RWSDY......QWAINMKRfFPRGA...TWDILNLAEALLE
  301-  340 (42.78/30.17)	KWTAFtflkmpQVLVKLKK.YPQGDkdfTEDVNSAFEFLLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.85|      21|     683|     259|     282|       3
---------------------------------------------------------------------------
  259-  282 (33.52/29.04)	P..LVEQLMMVKRMqriPSPLFVLEI
  945-  967 (31.33/18.59)	PftMVSELVKVSTM...SSPKIVLAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22881 with Med24 domain of Kingdom Metazoa
Unable to open file!