<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22874

Description Pre-mRNA-processing protein 40C
SequenceMATPASAVSDVGEPQAEAPPQAEALAAAPVPAAALQPPAPGQYFGNRPSFSYNVVSHANARLPTGQQFQPDTGANHVGQASRFVPPGSLQPPAPGQLTRPGTTLQGAMAPNPPGSIQLPFSMPRPSNIPFGASAQQGNLNTNTSKSDAPSVPMISPHTMQLPTGLPSNSPSTITSASGSSSIPIQMPTLSLPPRPEVFGSARLSVPGQPSPIFSNPTSLPGRPIVPSAAPLSQTAPSSIANPGVIPQNSQPPFYPSYQGHGIVPPQPLWGHPHPPQSTGAQQPPFQSYPGPVGSLGKPMVGASAATTAFANAQPSGVSAGADRKEQTSTNPGSEQPTLASAEPDSTGNAFAGVDMGSWFSWHGGQVNEQLEDKRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQRPPGYKGEPEKVATEPVPVSWDKLAGTDWSIVSTSDGKKYYYDNKQKVSSWQLPPEVAELLKNAESGPTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSVPSPLATSSSAASELNGSKAADAVLKGQQVSNHGEKSKDNNGDANMSDSSSDSDDEEHGPSKEDCIRQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAAQKAAVEAYKELLEEASKDINEKTAYQDFKRKWGADSRFEALDRKERESLFNEKVKAIQEKVQSMRKAVIADFKSMLRESKDITSASRWTKVKENFRSDPRYKATKHEERETIFNEYIAELKSAEQEAEQAAKAKVDEQAKLKERERETRKRKEREEREMERVKMKIRRKEAVSSYQALLVEMIKDPKVSWTESKPKLEKDPQGRALNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARATDEGKTVINSWSEAKCLLRSDPRFNKLASKDRESIWRRYADDLTRKLKQSDMKEKDKSDTDGKPRKSDTKEEKSDTDGKQRRSSDPPRRSLLGQVVIPPVEFEPIRACSASAWSILDPGSVNEISRDQ
Length1041
PositionUnknown
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.06
Grand average of hydropathy-0.805
Instability index48.83
Isoelectric point8.21
Molecular weight113563.28
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22874
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     199.70|      26|      26|     178|     203|       1
---------------------------------------------------------------------------
   78-  102 (29.73/ 8.74)	GQASRFV...P.PGSLqPP.APGQLTRPGT
  147-  174 (24.90/ 6.17)	DAPSVPM.ISPhTMQL.PTgLPSNSPSTIT
  178-  203 (46.76/17.79)	GSSSIPI.QMP.TLSL.PP.RPEVFGSARL
  207-  231 (36.51/12.34)	GQPS.PIfSNP.T.SL.PG.RPIVPSAAPL
  263-  283 (28.74/ 8.21)	....VPP.Q.P.LWGH.PH.PPQSTGAQQP
  284-  306 (33.07/10.51)	PFQSYPG...P.VGSL..G.KPMVGASAAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.84|      14|      15|     966|     980|       2
---------------------------------------------------------------------------
  966-  980 (24.08/19.52)	KEkDKSDTDGKPRKS
  983-  996 (27.76/17.31)	KE.EKSDTDGKQRRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     366.32|      69|     130|     597|     666|       3
---------------------------------------------------------------------------
  597-  651 (82.97/43.58)	..................KEDC.IRQFKEMLKE............RGVAPFSKWE.........KELPKIV..............FDPRFKAI.P..SHSTRRAIFDHYVRT
  653-  718 (43.73/20.88)	AEEERKEKRAAQKA.........................................aveaykellEEASKDInektayqdfkrkwgADSRFEAL.D..RKE.RESLFNEKVK.
  719-  780 (71.84/34.29)	AIQEK.........vqsmRKAV.IADFKSMLRE...........sKDITSASRWT.........KVKENFR..............SDPRYKA..T..KHEERETIFNEYI..
  781-  827 (43.66/16.98)	AELKSAEQEAEQAA..kaKVDE.....QAKLKE............RERETRKRKE.........REEREM.................ERVKM....................
  828-  888 (67.26/33.93)	.KIRRKE...............aVSSYQALLVE............MIKDPKVSWT.........ESKPKLE..............KDPQGRALnPdlGQGDAEKLFRDHVKD
  891-  952 (56.86/27.54)	...................ERC.VRDFRALLSEvitpevaaratdEGKTVINSWS.........EAKCLLR..............SDPRFNKL.A..SKD.RESIWRRY...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.71|      49|      49|     384|     432|       4
---------------------------------------------------------------------------
  356-  402 (82.00/41.12)	GSWFSWHGGQV..NEQLEDKRNTGVQDSDA...WSAHKTETGVVYYYNALTG
  403-  454 (80.66/40.33)	ESTYQRPPGYKGEPEKVATEPVPVSWDKLAgtdWSIVSTSDGKKYYYDNKQK
  455-  490 (48.05/21.20)	VSSWQLPPEV.AELLKNA.ESGPTSLQDAA...TIENK...GVI........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.59|      15|      16|       2|      16|       5
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    2-   16 (25.95/13.40)	ATP.ASAVSDVGEPQA
   18-   33 (21.64/ 9.81)	APPqAEALAAAPVPAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.94|      12|      19|     313|     329|       8
---------------------------------------------------------------------------
  313-  329 (16.35/14.42)	QPSGVSAGADrkeqtST
  335-  346 (22.60/ 8.77)	QPTLASAEPD.....ST
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.08|      11|      18|     566|     576|       9
---------------------------------------------------------------------------
  566-  576 (19.25/10.99)	SNHGEKSKDNN
  582-  592 (17.83/ 9.60)	SDSSSDSDDEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.97|      24|     121|     113|     137|      10
---------------------------------------------------------------------------
  113-  137 (43.85/28.78)	PGSIQLPFSMPRPSNIPFGASaQQG
  236-  259 (49.12/28.31)	PSSIANPGVIPQNSQPPFYPS.YQG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22874 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEQAKLKERERETRKRKEREEREMERVK
2) GASSVPSPLATSSSAASELNGSKAADAVLKGQQVSNHGEKSKDNNGDANMSDSSSDSDDEEHGPSKEDCIRQF
3) KLKQSDMKEKDKSDTDGKPRKSDTKEEKSDTDGKQRRSSDPPRRSLLGQVV
4) MATPASAVSDVGEPQAEAPPQAEALAAAPVPAAALQPPAPGQYFGNRPSF
5) VVSHANARLPTGQQFQPDTGANHVGQASRFVPPGSLQPPAPGQLTRPGTTLQGAMAPNPPGSIQLPFSMPRPSNIPFGASAQQGNLNTNTSKSDAPSVPMISPHTMQLPTGLPSNSPSTITSASGSSSIPIQMPTLSLPPRPEVFGSARLSVPGQPSPIFSNPTSLPGRPIVPSAAPLSQTAPSSIANPGVIPQNSQPPFYPSYQGHGIVPPQPLWGHPHPPQSTGAQQPPFQSYPGPVGSLGKPMVGASAATTAFANAQPSGVSAGADRKEQTSTNPGSEQPTLASAEPDSTGNA
790
532
959
1
54
826
604
1009
50
349










Molecular Recognition Features






MoRF SequenceStartStop




1) APGQYFG
2) DGKKYYYD
3) EAPPQAEALAAAPVPAAALQ
4) LDLIKKKLQ
39
443
17
521
45
450
36
529