<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22872

Description Mediator of RNA polymerase II transcription subunit 32
SequenceMAAEAPMAAHAPDPPAAGEEGTVGSCGVRRVRSCRVGRAGGPRAVGRREDGDHTHRARGLQAALGALPRRLLRIQATRSASFGSRPAPLAAAPGIKPIRIVRLEQMSKAVRWLIIELQHDAGGASTPGPPEVVVLLPPTPASARASRPVAAPATATRGGPAGGLDPRAGAATSARTAATPPSSGHARHGRSGSFGPEGPASRRSATPRAGDLAAAGPRRRVPEDGCGGGEQRASMAGSGWRPCTGRGAWRQRTAGSSCGARASLQQVGGRLPAAAAAELQRRRTAPHHLISAGSSFHFEPRHEGGGGWDQVR
Length312
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.03
Grand average of hydropathy-0.491
Instability index69.08
Isoelectric point11.77
Molecular weight31854.49
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22872
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.72|      27|      27|     136|     162|       1
---------------------------------------------------------------------------
   74-   99 (33.16/ 6.03)	IQATRSASFGSRP..APLAA..APGiKPIR
  136-  162 (48.96/12.05)	LPPTPASARASRPVAAPATA..TRG.GPAG
  164-  192 (33.26/ 6.07)	LDPRAGAATSARTAATPPSSghARH.GRSG
  195-  219 (37.34/ 7.62)	GPEGPASRRSATPRAGDLAA....A.GPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.95|      23|      28|     232|     254|       2
---------------------------------------------------------------------------
  232-  254 (48.41/24.71)	RASMAGSGWR.PCTGRGAW.RQRTA
  261-  285 (27.54/10.39)	RASLQQVGGRlPAAAAAELqRRRTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.82|      14|      62|      55|      68|       4
---------------------------------------------------------------------------
   29-   42 (22.47/ 8.21)	RRVRSCRVGRAGGP
   55-   68 (22.34/ 8.12)	HRARGLQAALGALP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22872 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQHDAGGASTPGPPEVVVLLPPTPASARASRPVAAPATATRGGPAGGLDPRAGAATSARTAATPPSSGHARHGRSGSFGPEGPASRRSATPRAGDLAAAGPRRRVPEDGCGGGEQRASMAGSGWRPCTGRGAWRQRTAGSSCGARASLQQVGGRLPAAAAAELQRRRTAPHHLISAGSSFHFEPRHEGGGGWDQVR
117
312










Molecular Recognition Features






MoRF SequenceStartStop




NANANA