<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22868

Description Mediator of RNA polymerase II transcription subunit 33A-like
SequenceMAAVKASEARGDPPLLRAVELARVVAGDGAGIPSADLAGILVSNLCFAHNSPSLWKLVGQAMASRLLCPLHVLALLTSRVLPQRRAQPEAYRLYLELIKCNVTSSSLVMEAGPNRDKITKSIADALQLSKIYGYCGTEFGHVVIMFVLAVVTKLIDSILEDCGFPSGMAEGQEGVYAIEGPQPMDLDVKRVSTENQNEHREQLRRKNTVMALDVLHMMIADRKIQSFLRLIFLNMPEKFSSLSQRLSSIEAHKVALETLLPSGHKINDLLIDIRRVCNANYQPNNKRIVDVLGNMRSGGSLLGQLNGAGRAACWIIFDIYVENAIDGKHLSGISAIEVLKEMTKTLQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILKEETDMFGVEGSKILPRRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKSNYNAGVVNSSMVAQTDSSTKAVGNMLHLIIEACISRNLVDTSAYLWPGYVGSSGPLKDTTLSQESPWLNFIKGAPLSGPLIDALVATPASSVGELDKLYNIAANGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSSTSTPGNMNHYLSQMSTLNEILLGVSYGDTIHILSLYGMLSSLTFDDGPRLIDQYRIYENPYLIQVPDVAAALMPLCEAFGSIAPPPNHKSTILGETSAYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSLRLELTLDYLLLMRNNCIDFSNSSAPSRDSYNNMGSVNEVPAQPVYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKGGVSSGNLSSTSSSSVSGSSVNASDDSFQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEIKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLECIQGVIGQALENCAGGSSWPSMPIIAALWTQKVRRWHDFIVLSCLRSPFGRDKDAVAQLVQSCFSSFLQSSSSGSDITANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWSHKLANGWSFNGPPQLKSGRTSLSCAASMAYQVAMLGGGLLCIAGGPLVVQVLYEETLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFFCGSLLWGADRTSPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSSFVFLVVKFVPSWLRDIKLDTLKKIAAGLRSWREHDLALSLLERGGPQAISVVVETML
Length1329
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.07
Grand average of hydropathy0.156
Instability index47.25
Isoelectric point7.84
Molecular weight144146.28
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22868
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.17|      63|      84|    1078|    1161|       1
---------------------------------------------------------------------------
 1078- 1146 (108.90/116.15)	GALL...GDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVIlkqvieWSHKLANGWSFNGPPQLKSGRTS
 1162- 1227 (104.27/67.91)	GGLLciaGGPLVVQVLYEETLPTLLLSAREQSLKDPGPVSSTL......QGYAMANMLFFCGSLLWGADRTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.04|      47|      84|     761|     807|       2
---------------------------------------------------------------------------
  721-  793 (68.91/36.55)	WKFykpPQ.........EYCLAGRGG..slrleltldylllmrnncidfsnSSAPS.RD.SYNNMGS.V..NEVPAQPVYIDSF..PKLRA
  794-  867 (48.35/23.53)	WYF...QN.........QACIASTLSglcnknpvhqvankilsmicrkmnkGGVSS.GNlSSTSSSS.VsgSSVNASD...DSFqrPAVPA
  868-  915 (33.77/14.30)	WEF..lEAvpfvleavlTACAHGRLS..............................sRD.LTTSLRDlV..DFLPASLAAIVS........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.54|      24|     322|     612|     639|       3
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  612-  639 (35.98/41.47)	PGNMNHylSQMSTLNEILlgVSYGDTIH
  939-  962 (41.56/30.36)	PGASLH..SIEAEIKEIL..ASAGVQIH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.64|      21|      84|     180|     200|       4
---------------------------------------------------------------------------
  180-  200 (39.47/31.90)	GPQPMDL..DVKRVSTEN..QNEHR
  263-  287 (30.17/22.40)	GHKINDLliDIRRVCNANyqPNNKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.07|      16|     156|     366|     385|      11
---------------------------------------------------------------------------
  366-  385 (19.38/21.42)	LRLVQRArePLEGPIphLDA
  527-  542 (29.69/15.38)	LNFIKGA..PLSGPL..IDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22868 with Med33 domain of Kingdom Viridiplantae
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