<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22850

Description Pre-mRNA-processing protein 40C
SequenceMATPASAVSDVGEPQAEEPPQAEAVVAAEPEGPEAGAAATAESAGASNQSALAAAASGDASSAPAPAPDSAAAPPPASPAARAAPGPPRPQFAVSPAYMAPPSLSPSPSPAFSYNVLPRAPPAPQVGGGAASLQPGSSPALTAAPVPAAALQPPAPGQYFGNRPSFSYNVVSHANARLPTGQQFQPDTGTNHVGQASRFVPPGSLQPPAPGQLTRPGTTLQGAMAPNPPGSIQLPFSVPRPSNIPFGASAQEGNLDTNTLKSDAPSAPMVSPHTMQLPTGLPLNSPSIITSASGSSSIPIQMPTLSLPPRPEVFGSGRLSVPGQPSPIFSNPTSLPGRPIVPSAASLPQTAPSSIANPGVIPQNSQPPFYPSYPGHGIVPPQPLWGHPYPPQPTVAQQPPFQSYPGPVGSLVKPMVGASAATMAFANAQPSGVSTGGDRKEQASTNPGSEQPTLASAEPDSIGNAFAGDMEVKSMNNWRTKEIQEFRIRMHGLLTKLKLPEKVATQPVPVSWDKLAGTDWSIVSTSDGKKYYYDNKQKVSSWQLPPEVAELLKNAESGPTSLQDAATIENKGVINIDASTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSVPSPLATSSSAASELNGSKPADAALKGQQVSNNGEKSKDNNGDANMSDSSSDSDDEERGPSKEDCIRQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAAQKAAVEAYKELLEEASEDINKKTAYQDFKRKWGADSRFEALDRKEREALFNEKVKAIQEKVQSMRKAVIADFKSMLRESKDITSASRWTKVKENFRNDPRYKATKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEHAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKVSWTESKPKLEKDPQGRALNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTDVGKTAINSWSEAKCLLRSDPRYNKLASKDRESIWRRYADDLTRKLKQSDMKEKDKSDTDGKPRRSSDTKEEKSDTDGKQHRSSDPPRRR
Length1088
PositionUnknown
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.05
Grand average of hydropathy-0.739
Instability index55.45
Isoelectric point8.87
Molecular weight117276.92
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22850
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     443.66|      49|      53|     110|     158|       1
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   19-   59 (40.49/ 9.74)	P.PQAE.AV..VAAEPE..GPEA...GAAA....TAESA..GA.SnqSALA.AA......................ASGD
   64-  103 (48.34/13.09)	P.A.............P..APD.......S....AAAPP..PA.S..PAAR.AAP..GP....PRpqfAVSPA.ymAPPS
  110-  158 (94.50/32.74)	P.AFSY.NV..LPRAPP..APQV...GGGA....ASLQP..GS.S..PALT.AAP..VP....AA...ALQPP...APGQ
  164-  212 (63.23/19.43)	P.SFSY.NV..VSHANA..RLPT...GQ.......QFQPdtGT.N..HVGQ.ASR.fVP....PG...SLQPP...APGQ
  232-  267 (32.23/ 6.22)	I.QLPF.SV...PR..P..S.NI...PFGA.....SAQE..GN.L..DTNTlKSD..AP....SA...............
  268-  324 (47.89/12.89)	P.MVSP.HTmqLPTGLPlnSPSIitsASGS....SSI.P..IQ.M..PTLS.LPP..RPevfgSG...RL..S...VPGQ
  327-  368 (44.57/11.48)	P.IFSNpTS..LPGRPI..VP.......SA....ASL.P..QT.A..PSSI.ANPgvIP....QN...S.QPP.......
  370-  407 (36.30/ 7.96)	...................YPSY..pGHGI....VPPQP.lWG.H..P....YPP..QP....TV...AQQPPfqsYPGP
  422-  464 (36.11/ 7.88)	TmAFA........NAQP..SGVS...TGGDrkeqASTNP..GSeQ..PTLA.SAE................PD...SIGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.24|      16|      16|    1051|    1066|       2
---------------------------------------------------------------------------
 1051- 1066 (31.22/20.79)	EKDKSDTDGKPRRSSD
 1068- 1083 (31.02/20.61)	KEEKSDTDGKQHRSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     362.09|      47|      47|     816|     862|       3
---------------------------------------------------------------------------
  685-  731 (66.16/41.47)	IRQFKEMLKE...........RGV..APFSKWEKELPKIVFDPRFKAiP.SHS....TRRAIFDH
  752-  799 (65.05/40.63)	VEAYKELLEE........aS.EDI..NKKTAYQDFKRKWGADSRFEA.L.DRK....EREALFNE
  816-  862 (78.67/50.88)	IADFKSMLRE.........S.KDI..TSASRWTKVKENFRNDPRYKA.T.KHE....ERETIFNE
  864-  907 (46.80/26.90)	IVELKSAEQE.........A.EQA..AKA....KVDEHAKLKERERE.TrKRK....EREEQEME
  919-  968 (56.11/33.91)	VSSYQALLVE.........MiKD...PKVS.WTESKPKLEKDPQGRA.L.NPDlgqgDAEKLFRD
  978- 1033 (49.31/28.79)	VRDFRALLSEvitpevaarT.TDVgkTAINSWSEAKCLLRSDPRYNK.L.ASK....DRESIW..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.51|      10|      15|     632|     641|       5
---------------------------------------------------------------------------
  632-  641 (16.99/ 7.75)	SELNGSKPAD
  674-  683 (15.52/ 6.36)	DEERGPSKED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22850 with Med35 domain of Kingdom Viridiplantae
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