<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22850

Description Pre-mRNA-processing protein 40C
SequenceMATPASAVSDVGEPQAEEPPQAEAVVAAEPEGPEAGAAATAESAGASNQSALAAAASGDASSAPAPAPDSAAAPPPASPAARAAPGPPRPQFAVSPAYMAPPSLSPSPSPAFSYNVLPRAPPAPQVGGGAASLQPGSSPALTAAPVPAAALQPPAPGQYFGNRPSFSYNVVSHANARLPTGQQFQPDTGTNHVGQASRFVPPGSLQPPAPGQLTRPGTTLQGAMAPNPPGSIQLPFSVPRPSNIPFGASAQEGNLDTNTLKSDAPSAPMVSPHTMQLPTGLPLNSPSIITSASGSSSIPIQMPTLSLPPRPEVFGSGRLSVPGQPSPIFSNPTSLPGRPIVPSAASLPQTAPSSIANPGVIPQNSQPPFYPSYPGHGIVPPQPLWGHPYPPQPTVAQQPPFQSYPGPVGSLVKPMVGASAATMAFANAQPSGVSTGGDRKEQASTNPGSEQPTLASAEPDSIGNAFAGDMEVKSMNNWRTKEIQEFRIRMHGLLTKLKLPEKVATQPVPVSWDKLAGTDWSIVSTSDGKKYYYDNKQKVSSWQLPPEVAELLKNAESGPTSLQDAATIENKGVINIDASTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSVPSPLATSSSAASELNGSKPADAALKGQQVSNNGEKSKDNNGDANMSDSSSDSDDEERGPSKEDCIRQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAAQKAAVEAYKELLEEASEDINKKTAYQDFKRKWGADSRFEALDRKEREALFNEKVKAIQEKVQSMRKAVIADFKSMLRESKDITSASRWTKVKENFRNDPRYKATKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEHAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKVSWTESKPKLEKDPQGRALNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTDVGKTAINSWSEAKCLLRSDPRYNKLASKDRESIWRRYADDLTRKLKQSDMKEKDKSDTDGKPRRSSDTKEEKSDTDGKQHRSSDPPRRR
Length1088
PositionUnknown
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.05
Grand average of hydropathy-0.739
Instability index55.45
Isoelectric point8.87
Molecular weight117276.92
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22850
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     443.66|      49|      53|     110|     158|       1
---------------------------------------------------------------------------
   19-   59 (40.49/ 9.74)	P.PQAE.AV..VAAEPE..GPEA...GAAA....TAESA..GA.SnqSALA.AA......................ASGD
   64-  103 (48.34/13.09)	P.A.............P..APD.......S....AAAPP..PA.S..PAAR.AAP..GP....PRpqfAVSPA.ymAPPS
  110-  158 (94.50/32.74)	P.AFSY.NV..LPRAPP..APQV...GGGA....ASLQP..GS.S..PALT.AAP..VP....AA...ALQPP...APGQ
  164-  212 (63.23/19.43)	P.SFSY.NV..VSHANA..RLPT...GQ.......QFQPdtGT.N..HVGQ.ASR.fVP....PG...SLQPP...APGQ
  232-  267 (32.23/ 6.22)	I.QLPF.SV...PR..P..S.NI...PFGA.....SAQE..GN.L..DTNTlKSD..AP....SA...............
  268-  324 (47.89/12.89)	P.MVSP.HTmqLPTGLPlnSPSIitsASGS....SSI.P..IQ.M..PTLS.LPP..RPevfgSG...RL..S...VPGQ
  327-  368 (44.57/11.48)	P.IFSNpTS..LPGRPI..VP.......SA....ASL.P..QT.A..PSSI.ANPgvIP....QN...S.QPP.......
  370-  407 (36.30/ 7.96)	...................YPSY..pGHGI....VPPQP.lWG.H..P....YPP..QP....TV...AQQPPfqsYPGP
  422-  464 (36.11/ 7.88)	TmAFA........NAQP..SGVS...TGGDrkeqASTNP..GSeQ..PTLA.SAE................PD...SIGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.24|      16|      16|    1051|    1066|       2
---------------------------------------------------------------------------
 1051- 1066 (31.22/20.79)	EKDKSDTDGKPRRSSD
 1068- 1083 (31.02/20.61)	KEEKSDTDGKQHRSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     362.09|      47|      47|     816|     862|       3
---------------------------------------------------------------------------
  685-  731 (66.16/41.47)	IRQFKEMLKE...........RGV..APFSKWEKELPKIVFDPRFKAiP.SHS....TRRAIFDH
  752-  799 (65.05/40.63)	VEAYKELLEE........aS.EDI..NKKTAYQDFKRKWGADSRFEA.L.DRK....EREALFNE
  816-  862 (78.67/50.88)	IADFKSMLRE.........S.KDI..TSASRWTKVKENFRNDPRYKA.T.KHE....ERETIFNE
  864-  907 (46.80/26.90)	IVELKSAEQE.........A.EQA..AKA....KVDEHAKLKERERE.TrKRK....EREEQEME
  919-  968 (56.11/33.91)	VSSYQALLVE.........MiKD...PKVS.WTESKPKLEKDPQGRA.L.NPDlgqgDAEKLFRD
  978- 1033 (49.31/28.79)	VRDFRALLSEvitpevaarT.TDVgkTAINSWSEAKCLLRSDPRYNK.L.ASK....DRESIW..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.51|      10|      15|     632|     641|       5
---------------------------------------------------------------------------
  632-  641 (16.99/ 7.75)	SELNGSKPAD
  674-  683 (15.52/ 6.36)	DEERGPSKED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22850 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEQAAKAKVDEHAKLKERERETRKRKEREEQEMERVKMKI
2) AGASSVPSPLATSSSAASELNGSKPADAALKGQQVSNNGEKSKDNNGDANMSDSSSDSDDEERGPSKEDCIRQF
3) KLKQSDMKEKDKSDTDGKPRRSSDTKEEKSDTDGKQHRSSDPPRRR
4) MATPASAVSDVGEPQAEEPPQAEAVVAAEPEGPEAGAAATAESAGASNQSALAAAASGDASSAPAPAPDSAAAPPPASPAARAAPGPPRPQFAVSPAYMAPPSLSPSPSPAFSYNVLPRAPPAPQVGGGAASLQPGSSPALTAAPVPAAALQPPAPGQYFGNRP
5) PPQPLWGHPYPPQPTVAQQPPFQSYPGPVG
6) TMAFANAQPSGVSTGGDRKEQASTNPGSEQPTLASAEPDSIGNAFAGDME
7) VVSHANARLPTGQQFQPDTGTNHVGQASRFVPPGSLQPPAPGQLTRPGTTLQGAMAPNPPGSIQLPFSVPRPSNIPFGASAQEGNLDTNTLKSDAPSAPMVSPHTMQLPTGLPLNSPSIITSASGSSSIPIQMPTLSLPPRPEVFGSGRLSVPGQPSPIFSNPTSLPGRPIVPSAASLPQTAPSSIANPGVIPQNSQPPFYPSYPGHG
874
615
1043
1
380
422
170
913
688
1088
164
409
471
377










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYD
2) KQSDMKEKD
3) LDLIKKKLQ
4) PQAEAVVAAEPEGPEAGAAATAESAGASNQSALAAAASG
528
1045
605
20
534
1053
613
58