<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22846

Description Mediator of RNA polymerase II transcription subunit 9-like
SequenceMDHHHPQQPQQYGDPYRGLVPSPQPDHHLHALQYHHQPQPALMSPPQPQPQPGLMSPPQPQPQPGLMSPPQPQPQPGLMSPPQPQPGLMSPPQPQQHHHASLASHFHLLHLVTRLADTIGTGTRDQNFDALVEELTSQFARCQQLLNSISGTISSKSTTVEGQRQSLDETRQLLDQRKELITKYRSSVEDLLKGDTR
Length197
PositionMiddle
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.04
Grand average of hydropathy-0.947
Instability index82.47
Isoelectric point6.51
Molecular weight22020.43
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22846
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.67|      21|      21|      37|      57|       1
---------------------------------------------------------------------------
   37-   57 (52.22/15.81)	QPQPALMSPPQPQPQPGLMSP
   61-   81 (53.45/16.32)	QPQPGLMSPPQPQPQPGLMSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.92|      25|      31|      95|     119|       4
---------------------------------------------------------------------------
   95-  119 (44.03/25.37)	QQHHHA...SLASHF.HLLHLVTRLADTI
  125-  153 (33.89/18.21)	DQNFDAlveELTSQFaRCQQLLNSISGTI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22846 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDHHHPQQPQQYGDPYRGLVPSPQPDHHLHALQYHHQPQPALMSPPQPQPQPGLMSPPQPQPQPGLMSPPQPQPQPGLMSPPQPQPGLMSPPQPQQHHHASLASHFH
1
107










Molecular Recognition Features






MoRF SequenceStartStop




1) QQYGDPYRGLVP
10
21