<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22843

Description Uncharacterized protein
SequenceMPNVPNTAWMPMQLPIKEVVRSSHRAHQQLIGLMQPQSQQNQIQQLQKNIGPSFHSHRDQLQKQLRIQQQHPIQQILKTSAGMVLQQNNIDQHKQHIHAPWGLQEDSASSISMDFTTYTGNPNNAGDWHEESFRMINKENITPHLREKLPFIERQIIRILDFQRTMSVMKGHQQFQQSAGQAPSSFISQQQQSDQASVYATAQTGHPCASDWQDELYEMAPAGHQQFHQSDGQAPSSDTSQQHQSSQGVQEQDNHTNQMPRASFSGANERTTADEAAAADASPLFDLNK
Length289
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.06
Grand average of hydropathy-0.934
Instability index71.82
Isoelectric point6.12
Molecular weight32696.67
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22843
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     195.49|      35|      49|     161|     195|       1
---------------------------------------------------------------------------
   28-   60 (35.83/ 9.57)	..QQLIGLM..QPQsqqnqiQQ.LQKNIG..P.SFHSHR...DQ
   62-   92 (30.86/ 7.53)	..QKQLRIQ..QQH....piQQiLKTSAG.....MVLQQNNIDQ
  161-  195 (67.60/22.57)	DFQRTMSVM..KGH......QQ.FQQSAGQAPSSFISQQQQSDQ
  211-  247 (61.21/19.95)	DWQDELYEMapAGH......QQ.FHQSDGQAPSSDTSQQHQSSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.35|      15|      15|     124|     138|       2
---------------------------------------------------------------------------
  124-  138 (27.57/17.23)	NAGDWHEESFRMINK
  140-  154 (25.78/15.73)	NITPHLREKLPFIER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22843 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASDWQDELYEMAPAGHQQFHQSDGQAPSSDTSQQHQSSQGVQEQDNHTNQMPRASFSGANERTTADEAAAADASPLFDLNK
2) RAHQQLIGLMQPQSQQNQIQQLQKNIGPSFHSHRDQLQKQLRIQQ
3) VMKGHQQFQQSAGQAPSSFISQQQQSDQASVYATAQTG
209
25
168
289
69
205










Molecular Recognition Features






MoRF SequenceStartStop




1) LFDLNK
284
289