<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22829

Description U-box domain-containing protein 35-like
SequenceMEIEEAAGEMEEMEAPAVSTVAVAISGSRSSRHALKWALDKFVPEGRVLFRILHVRPAITMVPTPMGNFIPISQVREDVASAYRKEAEWQASNMLLPFKKMCAQKKVEAEAVLLESDDIAAAISEEIGKFNISKLVLGSSSKNIFRRKFKGSKTATKISESIPSFCTAYVISKGKLSFVRSATSDVVETPQSISSSTVSSPSSRSLSSCAPSEWGDTYGTANVSFHQPSLPLQRDQALAIINKLSHRRASSGSVASEVSCNDDPGLTSSHSIVSEMQFSSGSSGNSMYKSFHRDNLPDNSDQASVSEISENVHHSNDQDNLRLQIERLRVKLQHLHKLHDCAKHESFDTTQELKKLRTQHIEDEIKLKEIELTEDRVRRLLRKQEMEEHEAGKEAEFKQRSDEIEEKHNHNGQANENETGKKTAGCCFDEYNRYKWEEIQASTSSFSSALMIGKGSYGTVYKAKFHHTVAAVKVLNSPEGYGSQQLQQELEVLGKIRHPHLLMMLGACPEHGCLVYEYMENGSLDDMLQRRNNTPPLAWFDRFRITWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMGQYLSTMIKNTAPVGTLCYIDPEYQRTGVLSMKSDVYALGIVILQLLTARSPMGLAHVVETALEDGCFVDILDASAGQWPLNETQELAALALKCSEMRRKDRPDLNEHVLPTLERLKDVATKARESVLQGHTAPPSHFICPILQEVMIDPYVASDGYTYDRKAIELWLSTNDTSPMTNLRLPNKSLIPNHSLRSAIMDWRSKSK
Length800
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.06
Grand average of hydropathy-0.412
Instability index50.76
Isoelectric point6.30
Molecular weight89313.42
Publications
PubMed=30683860

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22829
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.61|      39|      42|     324|     364|       2
---------------------------------------------------------------------------
  324-  364 (56.59/39.38)	QIERLRVKLQHLHKLHDCAKHESfDTTQELKKlRTQHIEDE
  369-  407 (62.02/34.61)	EIELTEDRVRRLLRKQEMEEHEA.GKEAEFKQ.RSDEIEEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.89|      27|      27|     178|     204|       3
---------------------------------------------------------------------------
  178-  204 (43.48/25.56)	FVRSATSDVVET..PQSISSSTVSSPSSR
  206-  234 (44.41/26.26)	LSSCAPSEWGDTygTANVSFHQPSLPLQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.81|      37|     137|     501|     537|       4
---------------------------------------------------------------------------
  501-  537 (69.54/47.14)	LLMMLGACPEHGC..LVYEYMENGSLDDMLQRRNNTPPL
  639-  677 (59.27/39.12)	ILQLLTARSPMGLahVVETALEDGCFVDILDASAGQWPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.33|      29|      31|     235|     263|       5
---------------------------------------------------------------------------
  235-  263 (47.76/30.49)	DQALAIINKLSHRRASSGSVASEVSCNDD
  267-  295 (47.57/30.34)	TSSHSIVSEMQFSSGSSGNSMYKSFHRDN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22829 with Med32 domain of Kingdom Viridiplantae
Unable to open file!