<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22828

Description U-box domain-containing protein 52
SequenceMFASAFSVASSYSAEQEVTARDSYIIVAVDRDKNSQQAAKWAVDKLLSRGSTLTLVHVRAEGGKDEGDAEITQLFISFRGYCARKGMHLKEVILDNSDISKAIIDYATSNAITDIVVGASTKNTFIRRFRNPDVPTCLMKMAPDYCTVHVIHKAKAIQVKAAKSPAPFATLPPKQYSQPIIESDASRASRGDWKKTSHSHTSSPMASRNSVDRLSAYAKAPSRDRPLTGARTAPQKDFDDYIDFIAPPRPSVTRSSFSDDIDLAMSMELPSIDFAESMELSSAMSMESLSSAGKDVEAEMRRLRLELKQTMEMYNSACKEAIDAKQKAAQMHQMKMEDSKKFQELRNAEEEALALVQMEKAKCRAALEAAEAAQKIAELEAQKRLRAEWKAKREAEDRKKATDALNKNDLRYRRYSIDDIEAATHKFDKALKIGEGGYGPVYKAVLDHTNVAIKILRPDASQGRKQFQQEIEVLSCMRHPNMVLLLGACPEYGCLVYEYMDYGSLEDRLCRRGKTLPIPWSVRFRIAADIATGLLFLHQAKPEPLVHRDLKPANILLDHNFVSKISDVGLARLVPQSAADVTQYRMTSTAGTFCYIDPEYQQTGMLTTKSDVYSLGIMLLQIITARSPMGLTHHVENAIERGTFQEILDPTVTDWSVEEALEFAKLALRCAELRKKDRPDLGKEILPELNRLRNLGHEYEASQVSSASTNCSSSAPYSFNNDDI
Length724
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.07
Grand average of hydropathy-0.420
Instability index46.41
Isoelectric point6.98
Molecular weight80828.18
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22828
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.40|      15|      17|     257|     271|       1
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  238-  251 (25.86/15.63)	FDDYIDF...IAPP.RPS
  257-  271 (29.13/18.54)	FSDDIDL..AMSME.LPS
  274-  291 (16.42/ 7.23)	FAESMELssAMSMEsLSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.25|      19|     292|     366|     384|       2
---------------------------------------------------------------------------
  366-  384 (30.04/20.47)	ALEAAEAAQKIAELEAQKR
  660-  678 (32.21/22.48)	ALEFAKLALRCAELRKKDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.55|      21|      21|     311|     331|       3
---------------------------------------------------------------------------
  311-  331 (35.43/19.34)	MEMYNS.ACKEAIDAKQKAAQM
  334-  355 (29.12/14.80)	MKMEDSkKFQELRNAEEEALAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     371.60|     115|     460|      44|     165|       4
---------------------------------------------------------------------------
   44-  165 (182.95/147.86)	DKLLSRGSTLTL.VHVRAeggKDEGDAEITQLFI..SFRGYCARKGMHLKEVILDNSDISKAIIDYATSNAI....TDIV..VGAST.KNTFIRR......FRNPDV.PTCLMKMAPDY.CTVHVIhkakAIQVKAAKSP
  443-  497 (28.53/11.58)	............................................................KAVLDH.TNVAI....KILR..PDASQgRKQFQQEievlscMRHPNM..VLLLGACPEYgCLVY................
  507-  628 (160.12/112.64)	DRLCRRGKTLPIpWSVRF...RIAADIATGLLFLhqAKPEPLVHRDLKPANILLDHNFVSK.ISDVGLARLVpqsaADVTqyRMTST.AGTFC........YIDPEYqQTGMLTTKSDV.YSLGIM....LLQIITARSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22828 with Med32 domain of Kingdom Viridiplantae
Unable to open file!