<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22824

Description U-box domain-containing protein 34-like
SequenceMASGGPPPTVAVAVAVRPGGSGSRLAARWVAAGLPDDGRAASVAVVHVIPTLSHVPSPTGERVPVTLVGREPAQAYARDRRARAEEALLPFRHLNCRRANVTVETVVVEGDGVAEALLRYARESGVRSLVLGAASFRWFRRVLSIPDVPGTVIQATQSSCNVFVVSKRRLIMKLARYPQTSGPNGNLRIEAISHEAFEQSHRSLLFDSFADDEARSDAFSHAHSSHGASNVVPSSESSEQVASESSVANAAGAEGSGETKELQDTLVVYDKACVELVNAKKKIQVLSTECSEEARKVEHALEWEEALKQTVADEKAKQVEALNQVERARRSFTREAYSRHKAEMATGMISEDRAQIVDAILSKSRTCRRYSKQDIQLATDNFSEARKIGEGGYGNVYRCTLDHTEVAVKVIQQDSIDRTDEFLKEVEILSQLRHPNLVLLVGFCPEIGCLVYEYLKNGSLEDQLFSSKAGRQPLHWFLRIQIIFEVSCGLAFLHARSPEPIVHRDLKPGNILLDGSYVGKIGDVGFAKLLSDLVPDWRTEYRETVVAGTLYYMDPEYQQTGTVRPKSDVFALGVIMLQLLTGRRPNGLIVGAEDAVRNGRLRDILDRSQSDWPVDEAEMFARLGLRCTALRCRDRPDLESEVLPELDEILHRVTSAVNLRNPKPSVPSHFICPITQELMEDPHVAADGHTYEHYAIRAWLKGHKTSPVTRSRLPNSSINPNHSLRAAIEQWRSQLPDQTNLRSGSQVHISP
Length751
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.06
Grand average of hydropathy-0.320
Instability index54.12
Isoelectric point6.56
Molecular weight83019.93
Publications
PubMed=30683860

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22824
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.05|      13|      20|     190|     203|       1
---------------------------------------------------------------------------
  190-  203 (19.02/14.08)	EAIShEAFEQSHRS
  213-  225 (24.03/12.62)	EARS.DAFSHAHSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.66|      20|      38|     311|     330|       2
---------------------------------------------------------------------------
  292-  309 (16.66/ 8.28)	...EEARKVEhA.LEWEEALKQ
  311-  330 (30.63/22.07)	VADEKAKQVE.A.LNQVERARR
  349-  369 (26.37/17.87)	ISEDRAQIVD.AiLSKSRTCRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.36|      45|      52|     422|     470|       3
---------------------------------------------------------------------------
  422-  470 (63.42/57.50)	FLKeVEILSQLRhPNLVLLVGFCPEIgcLVYEYLKNGS.LEDQLFSSKAG
  477-  522 (75.94/49.59)	FLR.IQIIFEVS.CGLAFLHARSPEP..IVHRDLKPGNiLLDGSYVGKIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.29|      32|     699|      16|      50|       4
---------------------------------------------------------------------------
    5-   26 (16.92/ 7.80)	..............GPPPTVAV.....avavrPGGSGSRLA
   27-   64 (52.09/31.79)	ARWVAAGLP...DDGRAASVAVVHVIptlshvPSPTGERVP
   82-  107 (25.28/ 9.89)	ARAEEALLPfrhLNCRRANVTVETVV...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.56|      10|      31|     337|     346|       7
---------------------------------------------------------------------------
  337-  346 (18.27/12.32)	YSRHKAEMAT
  370-  379 (17.28/11.28)	YSKQDIQLAT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22824 with Med32 domain of Kingdom Viridiplantae
Unable to open file!