<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22821

Description U-box domain-containing protein 33-like
SequenceMQSAGGAAHRRWDTASSSQYSFRTSVSSAADITAGDEVEEASPPRVEGRVFVAVPEEARHGKSTLLWAPENLVMDGLVVAHVHCPAQMIPMMGAKVHYTTVNPQRVNDHRKKVRAEAEEKLDEYVKICIRKKVSCEKLIIENEDVAKGLEELISLHSITRLVMGAAADKHHSKKMKSLKSKTALRLMETAVLSCKIWFTCKGHLICTREANTTVPAIPASPAFTNASNSSVTSVVSHLRSVTISHSHSESEASTSNGSPRHDLIRSRTEVGLYPSLEAISTPSRLHESYGRPTSTSRSSIDSWSEFGRLQNSLSDPSRNDDAVTVSGSAMPHQMQEPDDENFSSPSHELENPGVDANIYDRLSEALSEAELYKKEAYEESTKRLRAERDMISALQKAKEIESLYQHEIRQRKTTEETLARQVQEIEEMETQHHAISNELRDVKEQKFSLEQQIKEMVSVIKDCEEKMVANKHLLDVLQTDNEKLQQERDAAVAEADGLLQKNDQKIAMPLPAETLNTEFSYFELEQATQGFDEGLKIGEGGFGSVYKGFLRNTTVAIKLLNPQSMQGQSEFNQEVAVLGRVRHPNLVTLIGSCREAFGLVYEFLPHGSLEDRLACMNNTPPLTWQVRTKIICEMCSALIFLHSNQPHPVVHGDLKPGNILLDANFVSKLGDFGICRLLSQSNTAMSNATRSIATKLHRTTTPKGTFACMDPEFLSTGELTPRSDVYSFGIIILRLLTGRPPKRIAEVVEDAMEQGELHTILDPTAGGWPFVQANQLAHIGLRCAEMSRRRRPDLAGEVWKVVEPLMKAASLTAGRLSFAPSLDDDARAPSYFVCPIFQEVMSDPHIAADVFTYEAEAIIGWLDSGHDTLPMTNLKLEHCELTPNRALRSAILEWQQQLHHRT
Length902
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.06
Grand average of hydropathy-0.404
Instability index48.66
Isoelectric point5.86
Molecular weight100367.52
Publications
PubMed=30683860

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22821
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.45|      57|      85|     251|     335|       1
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  251-  308 (96.72/95.60)	EASTSN.GSPRHDLIRSRTEVGLYPSL.EAIStPSRLH..ESYGRPTSTSRSSIDSWSEFGR
  336-  396 (82.74/54.05)	EPDDENfSSPSHELENPGVDANIYDRLsEALS.EAELYkkEAYEESTKRLRAERDMISALQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     315.62|      97|     777|       1|     105|       2
---------------------------------------------------------------------------
    1-  105 (153.03/107.60)	MQSAGGAAHRRWDTASSSqYSFRTSVSSAADITAG........DEvEEASPPRVEGRVFVAVPEEARHGKSTLLWAPENlvmdglVVAHVHCPAQMIPMMGAKVHYTTVNPQR
  781-  885 (162.59/95.05)	LRCAEMSRRRRPDLAGEV.WKVVEPLMKAASLTAGrlsfapslDD.DARAPSYFVCPIFQEVMSDPHIAADVFTYEAEA......IIGWLDSGHDTLPMTNLKLEHCELTPNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.87|      15|      15|     413|     427|       3
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  413-  427 (22.08/14.52)	TTEETLARQVQEIEE
  430-  444 (22.79/15.24)	TQHHAISNELRDVKE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22821 with Med32 domain of Kingdom Viridiplantae
Unable to open file!