<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22820

Description Uncharacterized protein
SequenceMDGAANWRPTQGADPAAVAAAGGVDPNAAAPAGGDWRIQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMESQTKTQQNPGNAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQAQNQLIYQQQKMLMNQKLQQNSLMQPHMQQQQSLLQSTQMQSSQQAMMQMSSGLQPGQSTISQTQPMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVMRQQQHPQSSMHQQPSLQQTQPTQQSNIPLQQQQPQLMGQQSNLQQNQLISQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLPPQGNMSSLHQQQQQQNQQQQLLGTAPNVSSIQRMHMSNKAIQQPQQQHHAQQASMGLMQPQSQQNQLQQSQQHMMSQFQSQPNQLQQQLGMQQRLQTSAGMLLQQNNIDQKQYIQAPRGLQEVSSSTSVDSTAQTGHPGAGDLQEEIYQMIKNLKDQYFAELNDLYNKISMKIQHVDNHMPAQKSSDQYEKMKNFKALLERTLHFLQLNKSSIQPGFREKIPIYEKQIVNILNSQRRKPAQAPGQQQFQQSVGQAPSSNISQQQQASGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVPTTQQNVTNALQAGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNSMSTMQPNTNSMQQNPSSLQQLKQQQQEHQIMQSQQIKRQQMMQHLQQQKQIHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDANELKVRQAAAIKSGMYQQLGQRNYYQQMKQSGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQASLPPQTQSIAVNTPGISASPLLAEFTSADGSQPNVPTQVPTKSSAAERPLDRLLKALRTTPRQSLTAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGSGTSKKMKRDTSAMPLNVSSPGSVNDSLKQSYSVETPELQSTATSRVKWQKAEVNHALMEEIQEINQQLIDTELHVSEDDAESFAATSEGAEGTVIRCTFTAVAVSPSLKSMFASAQMSPILPLRLLVPASYPKCSPLLLDKFPDEQSRNSDDLSTKAKSKFGILLRGLAEPMSLREIARTWDACARKVISEYAQQTGGGSFSSSYGCWESCVGA
Length1317
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.03
Grand average of hydropathy-0.759
Instability index73.47
Isoelectric point9.26
Molecular weight143978.49
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22820
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.14|      24|      26|     315|     340|       1
---------------------------------------------------------------------------
  302-  327 (34.31/ 7.43)	PLNSVQQ..SVQSllQQPTQ..SVMRQQQH
  328-  355 (31.83/11.27)	PQSSMHQqpSLQQ..TQPTQqsNIPLQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     512.77|      57|      57|     815|     871|       2
---------------------------------------------------------------------------
  176-  229 (60.81/12.64)	SQT....STLQNMSGMPQN..................TMNNGlaqGTPQDM...YAAQRQMAGRQ.............QQ.Q...QQQAQN.QLI.YQ
  230-  288 (49.16/ 8.46)	QQKmlmnQKLQQNSLMQ.P..................HMQ.....QQQSLLqstQ.MQSSQ...QA....MMQmssGLQPgQ...STISQT.Q.P.M.
  372-  412 (50.62/ 8.99)	.........SQQNG.AGLP...................VQSN...N...LL...NMQQTQQMLNQQ....SM..............PLHQPqQLP.PQ
  413-  456 (52.73/ 9.74)	GNMsslhQQQQQQNQQQ....................QL.LG...TAPN............VSSIQ....RM....HM.S.N...KAIQQ....P.QQ
  457-  502 (60.83/12.64)	QHH....AQQASMGLMQ.P......................................QSQQNQLQQsqqhMMS...QFQS.Q...PNQLQQ.QLG.MQ
  656-  698 (46.76/ 7.60)	QQF......QQSVGQAP...................................ssNISQQQQASGLQ......Q...HDSH.T...NQMPQA.SLPsMS
  699-  768 (45.85/ 7.28)	TGV....QSSGAPGIQHVPapqatnfgvpttqqnvtnALQAG...SNLESA...QGNNFNHVQHGS....MGA...ALQQ.........GS.TGP.MQ
  799-  845 (80.44/19.67)	QNP....SSLQQLKQQQ...............................QEH...QIMQSQQIKRQQ....MMQ...HLQQ.Q...KQIHQS.QLP.MQ
  846-  905 (65.57/14.34)	QQL....QKQQQQGQMQVP..................QLHSG...NDANEL...KVRQAAAIK.SG....MYQ...QLGQ.RnyyQQMKQSgAFP.IS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     129.44|      26|      26|     113|     138|       3
---------------------------------------------------------------------------
  113-  133 (31.06/ 9.06)	.......PGNAQVIPNQNPPGPAPGLPP
  134-  161 (36.07/11.92)	QGSNPaqSSAIPLMSQQQTRQPNASTSV
  942-  962 (27.82/ 7.20)	.......SANSPFVPSPSPPVAPSPIPV
  963-  989 (34.48/11.01)	DSDKP.lSNLSSLTSTGQAGHQQASLPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.19|      20|      23|     561|     582|       4
---------------------------------------------------------------------------
  552-  571 (33.21/19.34)	DLQEEIYQMIKNLKDQYFAE
  574-  593 (36.98/30.58)	DLYNKISMKIQHVDNHMPAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     117.77|      27|      27|    1061|    1087|       5
---------------------------------------------------------------------------
  994- 1030 (21.87/ 7.27)	...IAV...NTPGisaspllaeftsaDGSQPNVPTQVPTKSS..A
 1035- 1063 (30.16/12.75)	LDRLLKalrTTPR.............QSLTAAVS.DIGSVVS..M
 1064- 1092 (36.19/16.74)	IDRIAG...SAPG.............NGSRAAVGEDLVAMTKcrL
 1093- 1116 (29.56/12.35)	QARNFI...THDG.............SGTSKKMKRDTSAM.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.90|      13|     585|     356|     370|      10
---------------------------------------------------------------------------
  356-  370 (19.98/14.86)	PQLmgQQSNLQQNQL
  922-  934 (24.92/11.26)	PQV..DQHNLLQSQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.93|      13|     585|     532|     544|      11
---------------------------------------------------------------------------
  532-  544 (22.45/14.02)	EVSSSTSV.DSTAQ
 1119- 1132 (19.47/11.01)	NVSSPGSVnDSLKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22820 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNSQRRKPAQAPGQQQFQQSVGQAPSSNISQQQQASGLQQHDSHTNQMPQASLPSMSTGVQSSGAPGIQHVPAPQATNFGVPTTQQNVTNALQAGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNSMSTMQPNTNSMQQNPSSLQQLKQQQQEHQIMQSQQIKRQQMMQHLQQQKQIHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDANELKVRQAAAIKS
2) MDGAANWRPTQGADPAAVAAAGGVDPNAAAPAGGDWRIQLQ
3) NQKLQQNSLMQPHMQQQQSLLQSTQMQSSQQAMMQMSSGLQPGQSTISQTQPMAMQSATQSGIQQNPLNSVQQSVQSLLQQPTQSVMRQQQHPQSSMHQQPSLQQTQPTQQSNIPLQQQQPQLMGQQSNLQQNQLISQQNGAGLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLPPQGNMSSLHQQQQQQNQQQQLLGTAPNVSSIQRMHMSNKAIQQPQQQHHAQQASMGLMQPQSQQNQLQQSQQHMMSQFQSQPNQLQQQLGMQQRLQTSAGML
4) PLLAEFTSADGSQPNVPTQVPTKSSAAERPLDRLLKALRTTPRQSLTAAVS
5) QQMKQSGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQASLPPQTQSIAVNTPG
6) RKISLKMLSMESQTKTQQNPGNAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQAQNQLIYQQQKM
7) YIQAPRGLQEVSSSTSVDSTAQTGHPGAGDLQEEI
642
1
236
1005
894
94
523
881
41
512
1055
1000
233
557










Molecular Recognition Features






MoRF SequenceStartStop




1) DWRIQL
35
40