<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22816

Description Putative mediator of RNA polymerase II transcription subunit 26b
SequenceMANGLDRWRDFFRGAGAGICDVIENAILVAAADAPRELLHRRDRIAERLFTAHFTAHRRDAAAPAPASLGSAAASATPATPVEEDKGSVRRVAEKESKVDSSSNGAHGGGHGHGDEDDDSDSDDERLRRAAASNYGHSYDDDDDEVQEEDEQQHAADHAEEEEEDHEAEELEALTNEIDEESQIVGEVLRIKDLLLHKEDQSDATLFESLRRLQLMQLSISTLKATEIGRAVNRLRKHNSQQIRHLVRTLIEGWKVLVDEWVSTTNAALADNSPGSSNPSVVDEEDEEGLPSPPLDEGAFFATQPTSIQLSEFFDEMDEDGNLRHNSDASLGNKRGNNGGRPANYSAVATQEPPRHSPGAVEKVQFRRPESARQEPSMRQANPQKPQSSSLQVKPHGVLNSNKQSKPSSYESGPGRPLKAAPPQKPFGDMKPRQTHNSVERRPATSQMDKSRLAAQSSSGARLELAKPKVNDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMVKSRNNLRNWANGRR
Length538
PositionUnknown
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.04
Grand average of hydropathy-1.031
Instability index61.07
Isoelectric point5.51
Molecular weight59604.53
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22816
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.79|      11|      16|     462|     472|       1
---------------------------------------------------------------------------
  462-  472 (19.50/12.16)	RLELAKPKVND
  480-  490 (16.29/ 8.98)	KLEAAKRRLQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.91|      15|      16|     342|     356|       2
---------------------------------------------------------------------------
  354-  369 (21.98/10.96)	PRHsPGAVEKVQFRRP
  372-  386 (25.98/14.33)	ARQ.EPSMRQANPQKP
  432-  443 (16.95/ 6.73)	PRQtHNSVE....RRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.82|      16|      16|      56|      71|       3
---------------------------------------------------------------------------
   40-   54 (17.97/ 6.08)	.HRRDRIAERLFTAHF
   56-   71 (28.77/13.65)	AHRRDAAAPAPASLGS
   73-   88 (22.08/ 8.96)	AASATPATPVEEDKGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.15|      16|      16|     392|     407|       4
---------------------------------------------------------------------------
  392-  407 (27.86/14.14)	QVKPHGVLNSNKQSKP
  411-  426 (29.29/15.20)	ESGPGRPLKAAPPQKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.91|      15|      16|     149|     163|       5
---------------------------------------------------------------------------
  149-  163 (24.97/11.49)	EDEQQHAADHAEEEE
  167-  181 (19.94/ 7.85)	EAEELEALTNEIDEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22816 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSEFFDEMDEDGNLRHNSDASLGNKRGNNGGRPANYSAVATQEPPRHSPGAVEKVQFRRPESARQEPSMRQANPQKPQSSSLQVKPHGVLNSNKQSKPSSYESGPGRPLKAAPPQKPFGDMKPRQTHNSVERRPATSQMDKSRLAAQSSSGARLELAKPKVNDDGLDNNRKLEAAKRRLQERYQEAENAKRQRTIQVMELGDIPKPKHQNRQPMVKSRNNLRNWANGRR
2) NAALADNSPGSSNPSVVDEEDEEGLPSPPLDEGAFFA
3) TAHRRDAAAPAPASLGSAAASATPATPVEEDKGSVRRVAEKESKVDSSSNGAHGGGHGHGDEDDDSDSDDERLRRAAASNYGHSYDDDDDEVQEEDEQQHAADHAEEEEEDHEAEELEALTNEID
310
266
55
538
302
179










Molecular Recognition Features






MoRF SequenceStartStop




1) DERLRRAAASNYG
2) RLELAKPKV
124
462
136
470