<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22804

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMAMSAPPPASSWLEWTAEYTKAAQAESRPPPEWAARVAAASAAAGEGGDVPWSAGLAEVLARALLSGGAAAPAAAAAAAWKYAEAALAARLASPALLLAILSTRVIPQRFSRPMEYRLYLELLKRHGFSFHYQMKAANFRKIMGLIDGNLSLSKIFGISTCQPGVFVVHFVLCILWQLVDVVLDDEGLLELTPEKKAQWPTRPEDVSTFEGTFTEHRTEKIEKLQKMNTVTTMELIEHLLRNKVITRILSLARENMQSHWGAFTNRLHLLATNSSTLQNSAISLEPFQQLILGDCNVYGETKHNMRKRFHPIVASNPLSSPNGRCLGASYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQSVNRSTWHDAFLALWVASLRLVQREHTIRLVVKLLSPSDPIDYSGRESLLIKLGPMLNVILSGISAVDYAPIFSFHGLIPELAAALMAICEVFGCLSPSVSWTLRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVLSPSSLAKQRSVQRQLQVPTSHPSCEHPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVRNNVDSLLNLMFRKANKGGTSIGSISGSSSISNSSGPGGDDLHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPASMNGSDWPSPSVNLSMVEEHIKKIVAATGVDVPRLVTGGSSSGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVIQLLRSCFAATLGMSSTSVCSCGGVASLLGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILYLLMLSVKDIAETTVPRQLSDKLKTTKYGTRHGRVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLSVQNLDQGGTRGGMVYKLGGHALAYLAVYSGMFAWGIDPTPVSRRRERVTRSHLEFLASALDGKISLGCDPSLWRAYVAGFLGLVVECTPCWVQEVELRVLKRLSSGLRQWGEDELAVALLRRAGPEAMGTAAELILGSEW
Length1106
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.08
Grand average of hydropathy0.166
Instability index42.62
Isoelectric point8.43
Molecular weight120204.74
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22804
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     269.73|      67|      73|     436|     508|       1
---------------------------------------------------------------------------
  128-  176 (48.42/20.29)	.....FSFHyqmkaanfrkimGLI.DGNLSLSKIFGISTC.QP.......GV.................FVVHFVLCI.LW..........
  434-  503 (122.06/74.76)	DYAPIFSFH............GLIPELAAALMAICEVFGCLSP.......SVSWTLR..TGEEISAHTVFSNAFILLLRLWKFNHPPleyC
  507-  575 (99.25/48.69)	DGAPVGS..............QLTPEY.LLLLRNSQV...LSPsslakqrSVQRQLQvpTSHPSCEHPIFMDSFP.KLKLWYRQHQA...C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.99|      22|      67|     664|     687|       2
---------------------------------------------------------------------------
  664-  687 (29.99/28.09)	PReLATGLKDlADFLPASLATIVS
  734-  755 (40.01/26.40)	PR.LVTGGSS.SGTLPLPLAAFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.53|      18|      20|       4|      23|       3
---------------------------------------------------------------------------
    4-   23 (31.38/21.81)	SAPPPasSWLEWTAEYTKAA
   27-   44 (33.15/17.18)	SRPPP..EWAARVAAASAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.97|      13|      73|     995|    1007|       4
---------------------------------------------------------------------------
  995- 1007 (27.36/13.77)	SGMFAWGIDPTPV
 1071- 1083 (24.61/11.72)	SGLRQWGEDELAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.34|      46|      46|     290|     335|       5
---------------------------------------------------------------------------
  253-  286 (44.46/28.62)	............RENMQSHWGAFTNRLHLLATNSSTLQNSAISLEP
  290-  335 (79.42/58.05)	LILGDCNVYGETKHNMRKRFHPIVASNPLSSPNGRCLGASYSALWI
  339-  382 (70.46/50.50)	MYLEDCLDGSIAATNSIEILSGLV..KALQSVNRSTWHDAFLALWV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.41|      25|      75|     700|     724|       7
---------------------------------------------------------------------------
  700-  724 (45.91/23.60)	PASMN...GSDWPSPSVNLSMVEEHIKK
  775-  802 (41.50/20.67)	PALENlaaSCPWPSMAIVAALWTQKVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.75|      20|      20|      54|      73|      10
---------------------------------------------------------------------------
   54-   73 (31.78/16.68)	AGLAE.VLARALLSGGAAAPA
   75-   95 (25.98/12.27)	AAAAAwKYAEAALAARLASPA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22804 with Med33 domain of Kingdom Viridiplantae
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