<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22802

Description Mediator of RNA polymerase II transcription subunit 33A-like
SequenceMADTNQSVVAVKPTLAKGTPSASFRLRNGSLNAVRLRRVFDLFDRNGDGEITVDELAQALDALGLDADRASLAATVGAYDAIVAAAAAADAAGLVPAGPADLERRVMAAVKASEARGDPPLLRAVELARVVAGEGAGIPSADLAGILVSNLCFAHNSPSLWKLVGQAMASRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELMKCNVTSSSLFMEAGPNRDKITKSIADALQLSKIYGYCGTEFGHVVIMFVLAVVTKLIDSILEDCGFPSGMAEGQESVYAIEGPQPMDLDVKMVSTENQNEHREQLRRKNTVMTLDVLHMMVRPEKFSSLSQRLSSIEAHKVALETLLPSGHKINDLLIDIRRVCNANYQPNNKHIVDVLGNMRSGGSLLGQITGAGRAACWIIFDIYVENAIDGKHLSDISAIEVLKEMTKTLQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILKEESDMFGAEGSKILPRRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKVAIFKANYNAGVVNSSMVVQTDSSTKAVGNMLHLIIEACISRNLIDTSAYLWPGYVVSSGPLKDTTLPQESPWLNFIKGAPLSGPFIDALVATPASSVGELDKLYNIAANGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSSTSTPGSMNHYLAQMSTLNEILLGVSYGDAIHILSLYGMVPDVAAALMPLCEAFGSIAPPPNHKSTILGETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMRNNRIDFSNSSAPSRDSYNNMGSVNEVPAQPVYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKGGVSSGNLSSTSSSSVSGSSVNASDDSFQRPAVPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEIKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGQALENCAGGSSWPSMPIIGALWAQKVRRWHDFIVLSCLRSPFGRDKDAVAQLVQSCFSSFLQSSSSGSDITANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWSHKLANGWSFNGPPQLKSGRTSLSCAVSMAHQVAMLGGGLLCIAGGPLVVQVLYEETLPTLLLSAREQSLKDPGPVSSTLQGYAMANMLFFCGSLLWGANRTSPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSRFMFLVVKFVPSWLRDIKLDTLKKIAAGLRSWREHDLALSLLERGGPQAISVVVETML
Length1394
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.07
Grand average of hydropathy0.161
Instability index46.53
Isoelectric point7.50
Molecular weight150421.28
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
calcium ion binding	GO:0005509	IEA:InterPro

GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22802
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     480.13|     173|     498|     554|     786|       1
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  554-  690 (156.15/104.52)	.........................................................................................AGVVNSSMVVQTDSS.................tKAVGNMLHLIIEACISRNLIDTSAYL.WPGYVVSSGPLKDTTLPQesPWLNFIKGAPLSGPFidalvatPASSVgELDKLYNIAAN.GSEEEKTAAAKI..LCGASLVRgwNIQEHVVGMVVKLL
  698-  786 ( 5.66/60.46)	SSTSTPgSMNHYlAQMSTLNEIllgvsygdaihilslygmvpdvaaalmplceafgSIAPPPNHKSTILGetsvYSVFSCAFLCLLRLW..............................................................................................................................................................
  824-  895 (118.61/59.28)	SNSSAP.SRDSY.NNMGSVNEV.........................................................................................................................................................................PAQPV.YIDSFPKLRAW.YFQNQACIASTLsgLCNKNPVH..QVANKILSMICRKM
 1043- 1108 (61.43/15.31)	.........................................................................................AALVSLTITFKLDRS........................LEYIQGV.IGQALENCAGGSsWPSMPI.IGALWAQKVRR...WHDFIVLSCLRSPF...............................................................
 1258- 1378 (138.28/64.38)	........................................................SLKDPGPVSSTLQG....YAMANMLFFCGSLLW...............ganrtspvmklsflsrrpRVVGTHMDFIAGVLDGHILLGCDPGT.WKAYVSRFMFLVVKFVP...SWLRDIK......................LDTLKKIAAGlRSWREHDLALSL..L.......................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.82|      20|     254|     475|     501|       2
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  481-  501 (29.21/30.03)	LLALIPlSVAAILKEESDMFG
  734-  753 (37.61/17.17)	LYGMVP.DVAAALMPLCEAFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.71|      16|      17|     104|     119|       4
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  104-  119 (27.70/14.14)	RRV.MAAVKASEARGDP
  123-  139 (22.00/ 9.84)	RAVeLARVVAGEGAGIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.96|      14|     187|     981|    1001|      12
---------------------------------------------------------------------------
  981- 1001 (19.48/27.76)	YFSAEItrgIWKPVpmngIEW
 1176- 1189 (27.48/14.27)	YFVSEV...ILKQV....IEW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.12|      23|      84|    1117|    1155|      13
---------------------------------------------------------------------------
  504-  527 (36.03/12.46)	GSKILPRRqGLISSLQDLIQYSGL
 1133- 1155 (40.09/15.71)	GSDITANR.GVGALLGDSITNQGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.42|      16|      17|      61|      76|      15
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   61-   76 (25.23/16.18)	DALGLDADRASLAATV
   80-   95 (24.19/15.18)	DAIVAAAAAADAAGLV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22802 with Med33 domain of Kingdom Viridiplantae
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