<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22798

Description Uncharacterized protein
SequenceMQSAGGAAAHRRWDTSSSSQYSFRTSVSSAADITAGDEVEEASPPPVEGRVFVAVPEEARHGKSTLLWALENLAKDGAGVVVAHVHCPAQMIPMMGAKVHYTTVNPQRVNDHRKKVRAEAEEKLDEYVKMCIRKKVSCEKLIIEKEDVAKGLEELISLHGITRLVMGAAADKHHSKKMKSLKSKTALRLMETAASSCKIWFTCKGHLIRTRPTSTSRSSIDSWSEFGRLQNSWSDPSRNDDAVTVSGSAMPHQMQEPDDENFSSPSHELENPGVDANIYDRLTEALSEAELYKKEAYEESTKRLRAERDMILALQKAKEIESVYQHEIKQRKTTEETLVRQAQEIEEIKTQHHAISNELQDVKEQKFALEQQIKEMASVIKDHEEKMAANKHLLGVLQTDNEKLQQERDAAVAEANGLRQKNDQKIAMPLPAETLNTEFSYFELEQAAQGFDEGLKIGEGGFGSVYKGFLRNTIVAIKLLNPQSMQGQSEFNQEVAVLGRVRHPNLVTLIGSCREAFGLVYEFLPNGSLEDRLACINNTPPLTWQVRTKIICEMCSALIFLHSNQPHPVVHGDLKPGNILLDANFVSKLGDFGICRLLSQSNTAMSNTTRSITTKLHRTTTPKGTFAYMDPELLSTGELTPRSDVYSFGIIILRLLTGRPPKRIAEVVEDAMERGELHAILDPTAGSWPFVQANQLAHIGLRCAEMSRRRRPDLAGEVWKVVEPLMKAASLTAGRLSFAPSLDDAHAPSYFVCPIFQEVMSDPHIAADGFTYEAEAIMGWLDSGHDTSPMTNLKLEHCELTPNRALRSAILEWQQQLHHRT
Length821
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.06
Grand average of hydropathy-0.432
Instability index47.49
Isoelectric point6.09
Molecular weight91565.98
Publications
PubMed=30683860

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22798
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     211.13|      67|     695|      30|     108|       1
---------------------------------------------------------------------------
   30-  108 (106.22/94.47)	AADITAG.....DEVEEASPPPvegrVFV.AVPEEarhgkstlLWALENLAKDG....AGVVVAHVHCPAQMIPMMGAKVHYTTVNPQR
  728-  804 (104.91/68.43)	AASLTAGrlsfaPSLDDAHAPS....YFVcPIFQE........VMSDPHIAADGftyeAEAIMGWLDSGHDTSPMTNLKLEHCELTPNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.33|      30|      36|     290|     323|       2
---------------------------------------------------------------------------
  290-  319 (47.57/45.08)	ELYKKEAYEESTKRLRAERDMILA........LQKAKE
  327-  364 (39.76/25.41)	EIKQRKTTEETLVRQAQEIEEIKTqhhaisneLQDVKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      14|      15|     374|     387|       3
---------------------------------------------------------------------------
  374-  387 (23.35/15.69)	KEMASVIKDHEEKM
  391-  404 (22.53/14.89)	KHLLGVLQTDNEKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22798 with Med32 domain of Kingdom Viridiplantae
Unable to open file!