<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22796

Description U-box domain-containing protein 52
SequenceMFASAFAVSSSYSAEQEATPRDSSIIVAVDQDKNSQQAAKWAVDKLLSRGSTLTLVHVRAEGGKDEGDADITQLFISYRGYCARKGMHLKEVILDNSDISKAIIEYATSNAITDIVVGASTKNTFIRRFRNPDVPTCLMKMAPDYCTVHVIHKAKAIQVKAAKSPAPFATLPPKQYSQPIIESNASRASRGDWKKTSHSHTSSPMASRNSVDRLSAYAKAPSRDRPLTGARTAPQKDFDDYIDFIVPPRPSVTRSSFSDDIDLAMSMELPSIDFAESMELSSAMSMESLSSAGKDVEAEMRRLRLELKQTMEMYNSACKEAIDAKQKAAQMHQMKMEESKKFQELRNAEEEALALVQMEKAKCRAALEAAEAAQKIAELEAQKRLRAEWKAKREAEDRKKATDALNKNDLRYRRYSIDDIEAATHKFDKALKIGEGGYGPVYKAVLDHTNVAIKILRPDASQGRKQFQQEIEVLSCMRHPNMVLLLGACPEYGCLVYEYMDYGSLEDRLCRRGKTLPIPWSVRFRIAADIATGLLFLHQAKPEPLVHRDLKPANILLDHNFVSKISDVGLARLVPQSAADVTQYRMTSTAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITARSPMGLTHHVENAIERGTFQEILDPTVTDWPVEEALEFAKLALRCAELRKKDRPDLGKEILPELNRLRNLGHEYEASQILTRSDEMIKGSSI
Length717
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.06
Grand average of hydropathy-0.420
Instability index48.32
Isoelectric point7.57
Molecular weight80186.76
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22796
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.39|      15|      17|     257|     271|       1
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  238-  251 (25.84/14.97)	FDDYIDF..IVPPR..PS
  257-  271 (29.13/17.74)	FSDDIDL..AMSME.LPS
  274-  291 (16.42/ 7.03)	FAESMELssAMSMEsLSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.51|      20|      22|     350|     371|       2
---------------------------------------------------------------------------
  326-  348 (25.68/ 9.12)	QKAAQMHQMkmeESKKFQELRNA
  350-  369 (29.83/18.23)	EEALALVQM...EKAKCRAALEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.32|      20|      24|     385|     407|       4
---------------------------------------------------------------------------
  385-  407 (25.99/30.37)	LRAEwkaKREAEDRKKATDALNK
  410-  429 (34.33/26.55)	LRYR...RYSIDDIEAATHKFDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.24|      16|     461|      44|      59|       5
---------------------------------------------------------------------------
   44-   59 (27.72/18.04)	DKLLSRGSTLTL.VHVR
  507-  523 (27.52/17.85)	DRLCRRGKTLPIpWSVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.23|      47|     349|     101|     149|       6
---------------------------------------------------------------------------
  101-  149 (75.48/66.98)	KAIIEYaTSNAITDIVVGAST.KNTFIRR......FRNPDVpTCLMKMAPDY.CTVH
  443-  497 (69.75/51.21)	KAVLDH.TNVAIKILRPDASQgRKQFQQEievlscMRHPNM.VLLLGACPEYgCLVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.87|      12|     386|     293|     304|       8
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  293-  304 (21.45/12.79)	GKDVEAEMRRLR
  682-  693 (21.42/12.77)	GKEILPELNRLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.72|      15|      16|     189|     204|      10
---------------------------------------------------------------------------
  177-  201 (16.31/15.13)	SQPiiesnasraSRGDWKKTShSHT
  202-  218 (20.42/12.40)	SSP.......maSRNSVDRLS.AYA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22796 with Med32 domain of Kingdom Viridiplantae
Unable to open file!