<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22795

Description U-box domain-containing protein 52-like
SequenceMSYTFNTQPIVTPAKKKDSRKDAADAAVRHCTPLSSRERGAGTAAVAVDGDRGSQYALKWAADHILARGHPFFLIHVRRKPTSFHAHGGKQFSISHVQDDVPAAFQAQVDLHAKDLMLPFRCFCSRRGLQCSEIVLDGTDVAKAIVDFVVRYKVDKLVLGAACRNAFTRTIWKLDVPTSVTKSAPSSCSVYVISKGKISSFRPATCADDNSKEDLKSDLPVKQLEGEPTDKLHDGHDPSKPMPARAVMPIYASSDGSTEDGSLLSSDQRGHSDSSSLQTASSCPSEFFNDIDQHGNHLSSDAHSALNHGHNVYSPLLPTTCSESNCHHLTEEDDAELSLFKIERNQNNSDMLPWKYIEEHKEPPRNPESSSSNLPSQRNRPDVEPCSQSAIGPKHKHLSLDTLSSDSQRRERITEEFTDHDYHDITQPLLRRWPPIQSPRDDNIGGSAPEEPHMLPLTLKALPRPIETKRMLECLPTRLECRIYKPDDITNATEHFSDELKVGEGGYGPVYKATLDGTVVAIKILYSNVTQGLKQFQQEVELLNNIRHPNMVHLVGACPEYGCLVYEYMPNGSLEDRLFCRSGTPPLPWPLRFKIAVEIASGLLYLHKTKPEAFVHRDLKPGNILLDAHFVSKIGDVGLARIIPRSMDCAAATTQYRETAAAGTFCYIDPEYQKTGLVCTKSDVYALGVIYLQMVTAREPMGLAYTVSDALEEGTFADVLDGNVAGWPVREAQAFAELALKCCEMRRRDRPDLETVVMPELIRLHRLVSPAEYSSPPPPSMDHAHHRSASEKDLHLDDDLVHILSDASMKGGISFAI
Length817
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.07
Grand average of hydropathy-0.440
Instability index51.06
Isoelectric point6.02
Molecular weight90534.26
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22795
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.21|      34|     232|     317|     354|       1
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  317-  354 (58.44/42.70)	LPTTCSESNC..HHLTEEDDAELSLFkierNQNNSDMLPW
  554-  589 (63.77/37.76)	LVGACPEYGClvYEYMPNGSLEDRLF....CRSGTPPLPW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     182.23|      40|     131|     476|     516|       2
---------------------------------------------------------------------------
  284-  315 (50.90/30.14)	PSEFFNDIDQHGNHLSSDAH..SALNHGHNVYSP......
  476-  515 (68.29/44.47)	PTRLECRIYKPDDITNATEHFSDELKVGEGGYGPVYKATL
  611-  647 (63.04/40.14)	PEAFVHRDLKPGNIL.LDAHFVS..KIGDVGLARIIPRSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.90|      36|      36|      75|     110|       3
---------------------------------------------------------------------------
   53-   78 (34.92/20.12)	...........GSQYALKWAADHILARGHPFFLIHVR
   79-  114 (62.31/42.04)	RKP.TSFHAHGGKQFSISHVQDDVPAAFQAQVDLHAK
  117-  147 (41.67/25.52)	MLPfRCFCSRRGLQCS.EIVLDGTDVA.KAIVD....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     269.08|      83|     187|     177|     264|       4
---------------------------------------------------------------------------
  177-  264 (131.29/92.29)	PTSVTKSAPSSCSVYVISKGKISSFRPAtcADDNSKEDLKSDLPVKQ.LEGEPTDklHDGHDPSKPMpARAVMPIYASSD....GST.EDGSLL
  367-  455 (137.79/80.68)	PESSSSNLPSQRNRPDVEPCSQSAIGPK..HKHLSLDTLSSDSQRRErITEEFTD..HDYHDITQPL.LRRWPPIQSPRDdnigGSApEEPHML
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22795 with Med32 domain of Kingdom Viridiplantae
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