<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22794

Description Uncharacterized protein
SequenceMDGGHGLRQPMSPAISASAVVPQQRQMQLHHHPARPAIADLFTLYLGINSKQRPEDPSRESSNKLQKRVTALNRDLPPRDEQFISDYEQLRMQFPDQEQLQAITESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNAVSSMEAPVGQGVPVTSGGPVTPSSSAITMPNAPNFHPSNPASPLSLMNTIGSPTQSGIDQPVGANVSPIKAAEFSSSAQLGTAARGDQSRRGAEISYLHHLSCRILLVGLESNLKPATHAVIFQHMVNWLVNWDQRPHNMDGADAMQTWRLEKPLHEWMHLCLDVIWILVNEEKCRIPFYELVRCNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVTNLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSQSQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSESQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSNQQVLRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKTLDANNIGPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTNLDERATGMFWVLSFTMAQPACEAVMNWFTSAGMADLIQGPNMQPNERIMMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLKDFFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRQYLCAGAWMLMNGHLGINSANLARVLREFSPEEVTANIYTMVDVLLHHIQFEVQRGHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRLVISLLEKPELQQRVKAFCSSRSPEHWLKNQHPKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKTPFSESFAKYLVSSNSSVCPPPEYFANLLLNLVNNVIPPLSSKSKSNPADTTRSTFNKHHASSQPGGIGNNDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVSAAQIVSSLVQIIAHVQAMLIQSNSGQGMSGGLGQSSGLPTSPSGGGAEPAGSNQTNSAASGINATNFVSRSGYSSQQLSVLMIQACGLLLAQLPPEFHMQLYSEAARVIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQVPNPVDASEITDIIDFFIKGPSSLPRRFDPFPLPTTVHWASDLLQRHDPPHVREGRCDDEPKQALSSRGLPGAEDDEDEEAPASAQPQGATSPASTAAAVSPSCSSSSTASASFATPGADVAAWSDPIDLFQVDSIMDMDWAGILSGCGEDGAGIDVDLFDHYPGDGFDQQVWM
Length1704
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.08
Grand average of hydropathy-0.115
Instability index48.34
Isoelectric point6.16
Molecular weight190363.96
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22794
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.68|      15|      16|    1206|    1220|       1
---------------------------------------------------------------------------
 1206- 1220 (28.14/18.22)	FAKYLVSSNSSVCPP
 1224- 1238 (26.54/16.74)	FANLLLNLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.10|      16|      16|    1588|    1603|       2
---------------------------------------------------------------------------
 1588- 1603 (28.99/17.88)	DDEPKQALSSRGLPGA
 1605- 1620 (29.11/17.99)	DDEDEEAPASAQPQGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      16|     383|     395|       4
---------------------------------------------------------------------------
  383-  395 (24.35/13.69)	RFLSQSYPSIAGE
  401-  413 (25.28/14.51)	RYSPITYPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.79|      19|      22|    1139|    1160|       5
---------------------------------------------------------------------------
 1139- 1160 (23.25/24.23)	YRLIEndATDIADrVLA.FYSSL
 1163- 1182 (30.54/17.65)	FHPLR..FTFVRD.ILAyFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.86|      10|      18|     660|     669|       6
---------------------------------------------------------------------------
  660-  669 (20.76/13.86)	MFWVLSFTMA
  677-  686 (21.10/14.22)	MNWFTSAGMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.85|      10|      18|    1552|    1564|       7
---------------------------------------------------------------------------
 1552- 1564 (15.99/13.08)	SSLPRRFDPfplP
 1571- 1580 (20.85/ 8.13)	SDLLQRHDP...P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.93|      12|      18|     498|     510|       8
---------------------------------------------------------------------------
  498-  510 (20.37/14.94)	ESQCwQDWLLFAD
  517-  528 (23.56/11.11)	KSGC.IDFLDFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.66|      18|      20|     431|     448|      10
---------------------------------------------------------------------------
  431-  448 (34.54/19.68)	WERAL...RCLRHALRTTPSP
  451-  471 (30.12/16.22)	WRRVLlvaPCYRSQSQQSSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.48|      16|      22|     172|     193|      11
---------------------------------------------------------------------------
   22-   37 (32.09/ 9.27)	PQQRQMQL....HHHPARPA
  172-  191 (24.38/18.67)	PSSSAITMpnapNFHPSNPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      10|      20|     885|     894|      12
---------------------------------------------------------------------------
  885-  894 (18.02/ 9.08)	YLQPLLEQIM
  908-  917 (19.37/10.37)	YFPPLIRDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.18|      16|      23|    1481|    1497|      15
---------------------------------------------------------------------------
 1481- 1497 (23.23/20.07)	RPVnSVAMLRIAFRILG
 1507- 1522 (27.95/18.54)	RPL.FMKTLALLFNVLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.94|      16|      22|    1417|    1437|      16
---------------------------------------------------------------------------
 1417- 1437 (21.79/25.35)	WLADSSrpvkeLDSAVG..YALL
 1441- 1458 (23.15/12.84)	WASQDN.....TSTAIGniVALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.14|      24|     934|     137|     163|      18
---------------------------------------------------------------------------
  137-  163 (37.39/26.78)	HLRWDSLLPSLLNAVSSMEAPVgqgVP
 1112- 1135 (45.76/24.61)	HLSWKDRYPPFFDDIAARLLPV...IP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.72|      15|      22|     192|     207|      19
---------------------------------------------------------------------------
  192-  207 (22.86/16.47)	SPLSlMNTIGSPTQSG
  217-  231 (24.86/13.18)	SPIK.AAEFSSSAQLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.93|      18|     934|      41|      63|      20
---------------------------------------------------------------------------
   46-   63 (32.11/26.96)	LGINSKQRPEDPSRESSN
 1239- 1256 (30.82/12.87)	LSSKSKSNPADTTRSTFN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22794 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DPPHVREGRCDDEPKQALSSRGLPGAEDDEDEEAPASAQPQGATSPASTAAAVSPS
2) KSKSNPADTTRSTFNKHHASSQPGGIGNNDGQRAFYQ
3) MDGGHGLRQPMSPAISASAVVPQQRQMQLHHH
1578
1242
1
1633
1278
32










Molecular Recognition Features






MoRF SequenceStartStop




1) LFTLYLGI
41
48