<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22793

Description Uncharacterized protein
SequenceMQDSAAEGPHPWSQDLDPLLRPQVLEKIVRTLAQVYHGQFDSTEDLNRVASRFENKVFHEANSKGDYLRRVSYRLVTLELKQKQKLLQHAASIHHHQVQMGSHMHPVNSVHAIHGGSDLVPNQNVAYPLAPNMHVKVKQEHIEVTGKTGQTLNSPQASTTPSAPSVQLSQQMVQPVATQKSKQLALQMQPSDFSGCNPTSITQPQGQPLVQPNVQQNPLRKNGMLPKELMMVNQKGLGFNQQQMNRQKYQMRVAQHASITKMHNGHPGARNSQPGATVGLRSTSRTHEQEALNEQIEMEPQPMALPQQLITATTMGSAGEVDWREKMFQKIKPLKDAYLSELMELDKAILVPKLSQRQFESLPNDRVQQYRYRVHLKQKTKLMVKFLLLEKSSIPDNYRVQLSTFVKSIQDLIGFYRKSKNLTMDARNKSQISHGQPKIINLIGDQAPSSGSTSHQNRQEKLVKSQLTKDIITTTPAAHQEINSNSLVGVESSCFPEKTRGSLQSLAIDKLQECCTQTLSHVIKSGIVKVSSPSASLVSTSPSPFSTPSGAKATASSSVSVKSTLSSPVAKPSVVKVASSCASVNSTLPSCFAESASIQAVSPCASAKSTLLPSSPVAKSGVIETTSSVTNSGCDPVALPCPSVHPTSSDNFERFYALLLQDISDTTSAQTVVGGTETNAETCFKQVPTIKPIMPASPLLAETVDHQAEDNEHPRNEIPVAKKPIDRLLDAVGTSSPAMLRSAANSVCSVLNMNDWVQQSEMDTFQDWAFLSEQCASSTANKMKRVLESTSLYSESAPFDCTGSKAEYSAERGPRRQKIQNAKDTLLDEISSANSMLLDTFISIAGDNGTDGISSSSGGTLIKLSYTATSLAPDLVSLFATPGMCIVMPVRLLVPADYPRSSPMLVCDQGDEQMRKRFSDISGTVDVAFRQALYGLPEPMSILDIARAWDASVRRAVVEFAQRHGGGTFSSSYGEWRGDAEGQVERRVEERGSGLQIRRRVEAGHGSDGDGVLDGVERAEDPLATVALEVHAANDDMDDGDEADE
Length1045
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.05
Grand average of hydropathy-0.436
Instability index49.58
Isoelectric point6.65
Molecular weight113824.17
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22793
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     103.27|      16|      22|     525|     540|       1
---------------------------------------------------------------------------
  525-  540 (25.91/13.84)	SGIVKVSSPSASLVST
  549-  564 (24.73/12.85)	SGAKATASSSVSVKST
  572-  587 (26.78/14.56)	PSVVKVASSCASVNST
  595-  610 (25.86/13.79)	SASIQAVSPCASAKST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.47|      14|     385|     635|     650|       3
---------------------------------------------------------------------------
  636-  649 (28.68/18.93)	PVALPCPSVHPTSS
  889-  902 (26.79/ 7.03)	PVRLLVPADYPRSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.78|      32|      42|     155|     195|       4
---------------------------------------------------------------------------
  155-  188 (50.17/47.11)	PQASTTPSAPsvQLSQQMVQPVATQKSKQL..ALQM
  198-  231 (53.60/27.51)	PTSITQPQGQ..PLVQPNVQQNPLRKNGMLpkELMM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.59|      14|      18|     421|     434|       6
---------------------------------------------------------------------------
  426-  445 (17.97/ 7.58)	ARNKSQISH....gqpkiiNLIGD
  447-  470 (16.62/ 6.48)	APSSGSTSHqnrqeklvksQLTKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.18|      20|     388|     301|     320|       9
---------------------------------------------------------------------------
  251-  269 (21.84/11.13)	..MRVAQHAsITKMHNGHPGA
  273-  290 (27.95/16.44)	QPGATVG...LRSTSRTHEQE
  301-  320 (34.38/22.01)	QPMALPQQL.ITATTMGSAGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22793 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVKQEHIEVTGKTGQTLNSPQASTTPSAPSVQLSQQMVQPVATQKSKQLALQMQPSDFSGCNPTSITQPQGQPLVQPNVQQNPLRKNGMLPKELMMVNQKGLGFNQQQMNRQKYQMRVAQHASITKMHNGHPGARNSQPGATVGLRSTSRTHEQEALNEQIEMEPQPMALPQQLIT
2) QHAASIHHHQVQMGSHMHPVNSVHAIHGGS
136
88
311
117










Molecular Recognition Features






MoRF SequenceStartStop




NANANA