<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22792

Description U-box domain-containing protein 34-like
SequenceMASGGPPPTVAVAVRPGGSGSRLAARWVAAGLPDDGRAAAVSLVHVIPTLSYVPSPAGERVPLALVGREPAEAYARDRRARAEEALLPFRHLNCGRANVTVETVVVEGDGVAEALLRYAHESGVRSLVLGSASFRWFRRVLSIPDVPSTVIQATQNSCNVFVVSKRRLIMKLARHPQTSESNANLRIEAISHETFEQSHRSLLFDNFADDEAHSDAFSHAHSSHSASNVVPSSESSVANAAGTEGSKNYDSLSSLGEAPCATSNSSEEDMLKYMTLLPQCQSVDEVAKLRKELQDTLVVYDKACVELVNAKKKIQVLSTECLEEARKVEHALEWEEALKQTVADEKAKQLEALNQVERARRSFTREAYSRHKAEMATSLISEDRAQIVDAILSKSRTCRRYSKQDIQLATDNFSEARKIGEGGYGNVYRCTLDHTEVAVKVIQQDSIDRTDEFLKEVEILSQLRHPNLVLLIGFCPEIGCLVYEYLKNGSLEDQLFNNKGRQPLHWFLRIQIIFEVSCGLAFLHARNPEPIVHRDLKPANILLDRSYVGKISDVGFAKLLSDLVPDWQTEYRETIVAGTLYYMDPEYQQTGTVRPKSDVFALGVIMLQLLTGRRPNGLIVSAENAVRNGRLRDILDKSQSDWPADEAEMFAKLGLKCTALKCRDRPDLESEVLPELDEILHRITSAVNLRNPKLSVPSHFICPITQELMEDPHVAADGHTYEQYAIRAWLKRHKTSPVTRSKLPNSSIIPNHSLRAAIEQWKSQLPDQTTDP
Length772
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.06
Grand average of hydropathy-0.330
Instability index50.72
Isoelectric point6.19
Molecular weight85872.34
Publications
PubMed=30683860

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22792
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.57|      25|      38|      67|      97|       1
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   67-   97 (36.81/43.77)	GREPAEAYARdrraRAEEAllPFRHLNCGRA
  108-  132 (42.76/30.37)	GDGVAEALLR....YAHES..GVRSLVLGSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.46|      17|      31|     368|     384|       2
---------------------------------------------------------------------------
  368-  384 (29.77/21.14)	YSRHKAEMATSLISEDR
  401-  417 (29.69/21.07)	YSKQDIQLATDNFSEAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.24|      17|      38|       8|      24|       3
---------------------------------------------------------------------------
    8-   24 (29.34/15.88)	PTVAVAVRPGGSGSRLA
   48-   64 (30.90/17.10)	PTLSYVPSPAGERVPLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.02|      25|      36|     464|     488|       4
---------------------------------------------------------------------------
  464-  488 (47.71/36.20)	RHP.NLVLLIGFCPEIGC.LVYEYLKN
  501-  527 (37.31/26.70)	RQPlHWFLRIQIIFEVSCgLAFLHARN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.49|      14|      43|     543|     557|       5
---------------------------------------------------------------------------
  543-  557 (21.68/18.67)	LDRSY..VGKI...SDVgFA
  583-  601 (17.81/ 9.30)	MDPEYqqTGTVrpkSDV.FA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22792 with Med32 domain of Kingdom Viridiplantae
Unable to open file!