<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22788

Description Putative mediator of RNA polymerase II transcription subunit 26c
SequenceMDRDERLRRALAAFGGDAWALLDAALVAAARDRPGELRARRDGIVERLYAAGGCSSCDARPPPPRAALAAAGLDEEEAAAPAAPVAEADAAEAGAAEEAEVLGDGAGGEPGLESRIVATRDFLEDPDQPDDELVSLLQNLADMDVTYEALQETDIGRHVNGLRKHPSAEVRRLVKQLIRKWKETVDEWVRLHNSGGDGGSSIIADGDCPEKIQCRSHQSPRVSGFQYSPSPQRHNGSTSEKTNNGLEPTMDMKRRPNPVPPHHNSRQMNNNHHSTTMSSAPAKVTRDHKDSLLDLDRLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKSRNALIRKSGSGGLPARHR
Length352
PositionUnknown
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.03
Grand average of hydropathy-0.822
Instability index55.46
Isoelectric point6.15
Molecular weight38412.24
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22788
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.72|      13|      35|       3|      16|       1
---------------------------------------------------------------------------
    3-   16 (19.46/16.54)	RDERLR........RALAAfGG
   33-   53 (18.26/ 9.43)	RPGELRarrdgiveRLYAA.GG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.48|      12|      28|     252|     263|       3
---------------------------------------------------------------------------
  252-  263 (25.27/13.80)	MKRRPNPVPPHH
  277-  288 (21.21/10.54)	MSSAPAKVTRDH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.16|      10|      28|     190|     199|       4
---------------------------------------------------------------------------
  190-  199 (19.28/ 9.87)	RLHNSGGDGG
  215-  224 (18.89/ 9.54)	RSHQSPRVSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22788 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARPPPPRAALAAAGLDEEEAAAPAAPVAEADAAEAGAAEEAEVLGDGAGGEP
2) WVRLHNSGGDGGSSIIADGDCPEKIQCRSHQSPRVSGFQYSPSPQRHNGSTSEKTNNGLEPTMDMKRRPNPVPPHHNSRQMNNNHHSTTMSSAPAKVTRDHKDSLLDLDRLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKSRNALIRKSGSGGLPARHR
59
188
110
352










Molecular Recognition Features






MoRF SequenceStartStop




1) ELRARRDGIVERLYAA
2) KSRNALIRKSGSGGLPARHR
3) RDERLRRAL
4) RIVATRDFLED
36
333
3
115
51
352
11
125