<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22784

Description Uncharacterized protein
SequenceMDGAANWRPTQGTDPAAVAAAGGVDPNAAAPAGGDWRTQLQPEARSRIVNKIMETLKKHLPVSVPEGLSELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMESQTKTQQNPGNAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAASVDSTAQTGHPGAGDLQEEIYQMIKNLKDQYFAELNDLYNKISMKIQHVDNHMPAQKSSDQYEKMKNFKALLERTLHFLQLNKSSIQPGFREKIPIYEKQIVNILNSQRRKPVQAPGQQQFQQSVGQAPSSNISQQQQASGLQQHDSHTNQMPQASLPSMSTGVQSSGASGIQHVPAPQATNFGVPTTQQNVTNALQPGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQQNASSLQQLKQQQQEHQIMQSQQIKRQQQIMQHLQQQKQMHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSGMYQQLGQRNYYQQMKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLPPQTQSIAVNTPGISASPLLAEFTSADGSQANVPTQVPTKSSAAERPLDRLLKALRTTQHQSLTAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGSGTSKKMKRDTSAMPLNVSSPGSVNDSLKQSYSVETPELQSTATSRVKWQKAEVNHALMEEIQEINQQLIDTELHVSEDDAESFAATSEGAEGTVIRCTFTAVAVSPSLKSMFASAQMSPILPLRLLVPASYPKCSPVLLDKFPDEQSRNSDDLSTKAKSKFSILLRGLAEPMSLREIARTWDACARKVISEYAQQTGGGSFSSSYGCWESCVGA
Length993
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.04
Grand average of hydropathy-0.632
Instability index62.64
Isoelectric point8.81
Molecular weight107188.77
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22784
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     214.68|      24|      24|     479|     502|       1
---------------------------------------------------------------------------
  422-  445 (27.36/ 7.25)	FNHV.QHGSMGAALQQGSTgP.MQGA
  446-  468 (25.41/ 6.16)	MN..AQQQSSSNLLSNNAM.StMQPN
  479-  502 (39.66/14.13)	LQQLKQQQQEHQIMQSQQI.K.RQQQ
  504-  523 (37.92/13.16)	MQHLQQQKQMHQ...S.QL.P.MQQQ
  524-  543 (29.93/ 8.68)	LQK...QQQQGQ.MQVPQL.H.SGND
  544-  562 (26.42/ 6.72)	MNELKVRQ..GAAMKSGM.....YQQ
  569-  592 (27.98/ 7.59)	YQQMK.QGGAFPISSPQNL.QaSSPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.00|      26|      26|     113|     138|       2
---------------------------------------------------------------------------
    3-   31 (24.12/ 7.21)	.GAANWRP..TQgtDPAavAAAGGVD...PNAAAP
   42-   70 (29.84/10.78)	PEARSRIV..NK..IME..TLKKHLPvsvPEGLSE
  113-  138 (51.89/24.51)	PGNAQVIP..NQ..NPP..GPAPGLP...PQGSNP
  140-  165 (24.16/ 7.24)	..QSSAIPlmSQ..QTR..QPNASTS...VQGSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.62|      24|      26|     326|     349|       3
---------------------------------------------------------------------------
  182-  208 (28.51/ 9.14)	NMSGMP..QNTMNNglaqgTP............QDMYAAQR
  326-  349 (44.19/18.17)	QAPGQQQFQQSVGQ.....AP............SSNISQQQ
  350-  385 (30.92/10.53)	QASGLQQHDSHTNQ.....MPqaslpsmstgvqSSGASGIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.35|      15|      26|     749|     763|       4
---------------------------------------------------------------------------
  749-  763 (24.94/14.90)	GNGSRAAVGEDLVAM
  778-  792 (23.41/13.51)	GSGTSKKMKRDTSAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     105.01|      23|      24|     249|     271|       5
---------------------------------------------------------------------------
  227-  246 (22.94/12.12)	......DLQEEI.YQM..IKNLKDQYFAE
  247-  268 (30.24/18.27)	.LN...DLYNKI.SMK..IQHVDNHMPAQ
  269-  294 (24.13/13.13)	KSS...DQYEKMkNFKalLERTLHFLQLN
  295-  320 (27.71/16.15)	KSSiqpGFREKI.PIY..EKQIVNILNSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.89|      23|     235|     387|     416|       6
---------------------------------------------------------------------------
  602-  631 (26.80/13.95)	QHNL.LQSqLKTGTPLHS........anspfVPsPSP.....PV
  633-  674 (20.09/10.90)	PSPIpVDS.DKPLSNLSSltstgqaghqqtsLP.PQTqsiavNT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22784 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDGAANWRPTQGTDPAAVAAAGGVDPNAAAPAGGDWRTQLQPEARSRIVNKI
2) PLLAEFTSADGSQANVPTQVPTKSSAAERPLDRLLKALRTTQ
3) QQMKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLQSQLKTGTPLHSANSPFVPSPSPPVAPSPIPVDSDKPLSNLSSLTSTGQAGHQQTSLPPQTQSIAVNTP
4) RKISLKMLSMESQTKTQQNPGNAQVIPNQNPPGPAPGLPPQGSNPAQSSAIPLMSQQTRQPNASTSVQGSLPSLGQSLPGVSQTSTLQNMSGMPQNTMNNGLAQGTPQDMYAAQRQMAASVDSTAQTGHPGAGDLQEEI
5) SQRRKPVQAPGQQQFQQSVGQAPSSNISQQQQASGLQQHDSHTNQMPQASLPSMSTGVQSSGASGIQHVPAPQATNFGVPTTQQNVTNALQPGSNLESAQGNNFNHVQHGSMGAALQQGSTGPMQGAMNAQQQSSSNLLSNNAMSTMQPNTNSMQQNASSLQQLKQQQQEHQIMQSQQIKRQQQIMQHLQQQKQMHQSQLPMQQQLQKQQQQGQMQVPQLHSGNDMNELKVRQGAAMKSGMYQQLGQRNY
1
681
570
94
319
52
722
675
232
568










Molecular Recognition Features






MoRF SequenceStartStop




NANANA