<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22780

Description Uncharacterized protein
SequenceMEGGGGSWRAHLPWRSRQRVVRRIFEVLERSFPADLTEGLIDLQRVAERLEWRIYSVACDQNEYLRRISLRILYFSSESPLLLEPRPTQMALPSNELSHRREVDHSDTEEDLLDRDRPRSHKKLCEDDRLSDLPDSMLHHIMSFLSAKEAARTCVLSQRWRLLWTSAPCLDISIDQFGNDRVRFSKFVEHLLQSRAPASLDTFCLHTCALDRACNWIDHAIKHNVRVLEFTEDARWEPLYLDPQCLAFSSEFLTCLKLTNVALDGSVFDPLSRTCPSLETLQLIGSFSEVSEISSNSLKRLDIIDCFFSKDLMICTPNLISLCFESPQCKCAWFNDPSKTTAAITLCDISSAKIIELSSSMIQVRFSKELLRCMFNNLKNLSLGEWCLSDNFSPLVYFLQHSPRLEKLTLKLKSDNGVGIDTICLHERSFSSDLLKKATIFCTEGDARVSVLMTMLRANAKSLEEVDIIHY
Length471
PositionTail
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.08
Grand average of hydropathy-0.170
Instability index53.92
Isoelectric point5.86
Molecular weight54028.45
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22780
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     166.90|      39|      40|     165|     204|       1
---------------------------------------------------------------------------
  103-  125 (27.86/12.17)	.........................VDHSDTEEDLLDRD.RPRSHKKLC
  165-  204 (65.07/43.38)	TSApCLDIS...ID.....QFGNDRVRFSKFVEHLLQSR.APASLDTFC
  207-  243 (39.08/20.30)	TCA..LDRAcnwID.....HAIKHNVRVLEFTE...DARwEPLYLDP..
  245-  281 (34.90/17.09)	....CLAFS...SEfltclKLTNVALDGSVF.DPL..SR.TCPSLETL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.55|      40|      40|     354|     393|       2
---------------------------------------------------------------------------
  303-  329 (42.40/23.79)	.......IIDCFFSKDLMICT.PNLISL.....CFES.PQC
  354-  393 (69.76/43.80)	IIELSSSMIQVRFSKELLRCMFNNLKNLSLGEWCLSD.NFS
  396-  431 (52.39/31.10)	VYFLQHSP...RLEKLTLKLKSDN..GVGIDTICLHErSFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.06|      17|      42|       8|      24|       3
---------------------------------------------------------------------------
    8-   24 (33.33/23.40)	WRAHLPWRSRQRVVRRI
   52-   68 (30.73/21.00)	WRIYSVACDQNEYLRRI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22780 with Med15 domain of Kingdom Viridiplantae
Unable to open file!