<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22776

Description Putative mediator of RNA polymerase II transcription subunit 26c
SequenceMDRDERLRRALTAFGGDAWALVDAALAAAARDRPGELRARRDGIVERLYAAAGCSSCDARPPPPPRAALAAAGLDEEDGEEAAAPVSPVAEADAAEAGDAEAEELGASGEPGLESRIVAIRDFLEDPDQPDDELVSLLQNLADMDVTYKALQETDIGRHVNGLRKHPSAEVRRLVKQLIRKWKEIVDEWVRLHNSGGDGGSSIIADGDSPEKIQGRSHQSPRFLQKINYGGMVFVSEILDGSTSEKTNNGLEPTMDMKRRPSPAPTHHNSRQMNNNHHSTTMSSAPAKVTRDHKDSLLDLDRLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKNRNALIRKSGSGGLPARHR
Length357
PositionUnknown
OrganismPanicum miliaceum (Proso millet) (Broomcorn millet)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum.
Aromaticity0.03
Grand average of hydropathy-0.768
Instability index56.53
Isoelectric point5.87
Molecular weight39066.06
Publications
PubMed=30683860

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22776
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.08|      30|      42|      24|      53|       2
---------------------------------------------------------------------------
   24-   53 (51.55/30.03)	AALAAAARD.RPG.ELRARRDGIVERLYAAAG
   67-   98 (41.53/22.75)	AALAAAGLDeEDGeEAAAPVSPVAEADAAEAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.01|      11|      32|     202|     212|       5
---------------------------------------------------------------------------
  202-  212 (20.05/11.45)	SIIADGDSPEK
  236-  246 (18.96/10.49)	SEILDGSTSEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22776 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CSSCDARPPPPPRAALAAAGLDEEDGEEAAAPVSPVAEADAAEAGDAEAEELGASG
2) ILDGSTSEKTNNGLEPTMDMKRRPSPAPTHHNSRQMNNNHHSTTMSSAPAKVTRDHKDSLLDLDRLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKNRNALIRKSGSGGLPARHR
54
238
109
357










Molecular Recognition Features






MoRF SequenceStartStop




1) ERLRRAL
2) KNRNALIRKSGSGGLPARHR
3) LESRIVAIRDFLED
4) LRARRDGIVERLYAAAGCSSCDA
5) RAALAAAGL
5
338
113
37
66
11
357
126
59
74